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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttggagtatttgcgaccgcaattgtggttgcatgagctgcatttgtctgctattccctcaatgtcaataaactcgatgaaactacaacctcaatttaaaaccttgagaatcatatatgattgggaaattccaccatcttttattttattgagtggattttaattacatataattgaatgaaaatgaagGGCGTCACTTCAATTGTTGGAGCTGTTGCGACGGATATGGGAATCTTGACAACTCCACAATTGCATTGGATGGTTCGTGCTAGAAATAAGGGTATGAAAG

Basic information

species Glycine max
transcript GLYMA07G10810.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G10810.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv02s0012g00620.t01 (Vitis vinifera), 3'ss of exon 3
gtatttggagtatttgcgaccgcaattgtggttgcatgagctgcatttgtctgctattccctcaatgtcaataaactcgatgaaactacaacctcaat-ttaaaaccttgagaatcatatatgattgggaaattccaccatcttttattttattgagtggattttaattacatataattga-atgaaaatgaagGGCGTCACTTCAATTGTTGGAGCTGTTGCGACGGATATGGGAATCTTGACAACTCCACAATTGCATTGGATGGTTCGTGCTAGAAATAAGGGTATGAAAG
                                                                                |   ||| |  ||| | |  |  |    || ||||  | | | ||    |  ||      |  ||| | | ||| | |    | || ||   | |  || | ||   | |||||||  ||| |||||||||||||||  ||||    || |||||  | || |||||||||||| | |||||||||||||| ||||| |||||||| |||||||
-------------------------------------------------------------------------------gtattacttcctcctgattgctggattgctgtgaattttgtctcat----atgttatttggttctttttataattaaatcatgtatagtttattgtttttcatatttgattgaagGGAATCAGTTCAATTGTTGGAGCCATTGCCCTTGACATGGGGGTTTTAACAACTCCACAACTACATTGGATGGTTCGGGCTAGGAATAAGGGCATGAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16348093|gb|BI973688.1|BI973688
EST:     CATAATTTTAGAAAATGGTCTGCTACTATGATTTCAGCAGCAATGTCAAG                         GGCGTCACTTCAATTGTTGGAGCTGTTGCGACGGATATG
genomic: CATAATTTTAGAAAATGGTCTGCTACTATGATTTCAGCAGCAATGTCAAGgtatttggag ... gaaaatgaagGGCGTCACTTCAATTGTTGGAGCTGTTGCGACGGATATG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catcttttattttattgagtggattttaattacatataattgaatgaaaatgaagGGCGTCACTTCAATTGTTGGAGCTGTTGCGACGGATATGGGAATCTTGACAACTCCACAATTGCATTGGATGGTTCGTGCTAGAAATAAGGGTATGAAAG
                       ttttaat  putative branch site (score: 3)
     tttattttattgagtg  TA-rich tract