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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttaccttctacatcaatttgcatttaataagtacaacgtgctcatgaaactcaaagtgtgatgtatatatctttcactgatttcaaccttcatgttttgatttctcacatttctgtaattttcagGAAAAAGATCTGCTTGAGGTTTGGCAGCTGTTATTGCCTATAATATATGGTTTTTTAGAAACTATTGTCCTATCTCAAACTTATGTACGCACTCTTGCTG

Basic information

species Glycine max
transcript GLYMA07G07710.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G07710.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv15s0046g02510.t01 (Vitis vinifera), 3'ss of exon 8
gtatttacc-ttctacatca--------atttgcatttaataag---tacaacgtgctcatgaaactcaaagtgtgatgtatata---tctttcactgatttcaaccttcatgttttgattt--ctcacatttctgtaat-tttcagGAAAAAGATCTGCTTGAGGTTTGGCAGCTGTTATTGCCTATAATATATGGTTTTTTAGAAACTATTGTCCTATCTCAAACTTATGTACGCACTCTTGCTG
||||| |    |  |  |||        |    | || | ||||   || |   ||  |   ||     ||     ||| ||||    | ||| |     || |     ||    ||| | |  ||   || ||| |  | |||||||| |||||  |||||||| | | ||||||| |||||||||| ||||||||| || |||||||| |||| |||||||| || ||||||||||||||||  |
gtattgattacttcatgtcatgtttatgacccacgttgagtaagatgtatattatgtgctccaagtaggaacaacaatgaatattgattattttatcacgttgagatagcagaccttgttctaactttaatatctatgctctttcagGACAAAGAATTGCTTGAGATCTTGCAGCTGCTATTGCCTATCATATATGGTGTTATAGAAACTGTTGTTCTATCTCAGACGTATGTACGCACTCTTGTGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttcactgatttcaaccttcatgttttgatttctcacatttctgtaattttcagGAAAAAGATCTGCTTGAGGTTTGGCAGCTGTTATTGCCTATAATATATGGTTTTTTAGAAACTATTGTCCTATCTCAAACTTATGTACGCACTCTTGCTG
                               ttctcac  putative branch site (score: 2)
                                       tttctgt  CT-rich tract
                                      atttctgtaatttt  TA-rich tract