1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...agtgtttctttcatcaattttcttgtgcttaatatctgacacttacatgttcctctaactgtccattcttcactgttctgtgtaaaattctatttggcagATACGAAGTCATGCACAGAAGTATTTTCTTAAAGTTCAGAAGAAGGGAACAAGTGAACATGTACCTCCTCCCCGGCCAAAGAGAAAAGCTGCTCGCCCAT
species | Glycine max |
transcript | GLYMA07G07200.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGGACTGGAAAAAGATTGAAGCATTTGTTGGTTCANAAACAGTTATCCAG ATACGAAGTCATGCACAGAAGTATGNTCTTAAAGGTCAGAAGAAGGGAACAEST: gi|9204594|gb|BE330818.1|BE330818
genomic: GGGACTGGAAAAAGATTGAAGCATTTGTTGGTTCAAAAACAGTTATCCAGgtatttataa ... tatttggcagATACGAAGTCATGCACAGAAGTATTTTCTTAAAGTTCAGAAGAAGGGAACA
EST: GGGACTGGAAAAAGATTGAAGCATTTGTTGGTTCAAAAACAGTTATCCAG ATACGAAGTCATGCACAGAAGTATTTTCTTAAAGTTCAGAAGAAGGGAACAEST: gi|298184043|gb|HO029256.1|HO029256
genomic: GGGACTGGAAAAAGATTGAAGCATTTGTTGGTTCAAAAACAGTTATCCAGgtatttataa ... tatttggcagATACGAAGTCATGCACAGAAGTATTTTCTTAAAGTTCAGAAGAAGGGAACA
EST: GGGACTGGAAAAAGATTGAAGCATTTGTTGGTTCAAAAACAGTTATCCAG ATACGAAGTCATGCACAGAAGTATTTTCEST: gi|209716262|gb|BW657565.1|BW657565
genomic: GGGACTGGAAAAAGATTGAAGCATTTGTTGGTTCAAAAACAGTTATCCAGgtatttataa ... tatttggcagATACGAAGTCATGCACAGAAGTATTTTC
EST: GGGACTGGAAAAAGATTGAAGCATTTGTTGGTTCAAAAACAGTTATCCAG ATACGAAGTCATGCACAGAAGTATTTTCTTAAAGTTCAGAAGAAGGGAACA
genomic: GGGACTGGAAAAAGATTGAAGCATTTGTTGGTTCAAAAACAGTTATCCAGgtatttataa ... tatttggcagATACGAAGTCATGCACAGAAGTATTTTCTTAAAGTTCAGAAGAAGGGAACA
catgttcctctaactgtccattcttcactgttctgtgtaaaattctatttggcagATACGAAGTCATGCACAGAAGTATTTTCTTAAAGTTCAGAAGAAGGGAACAAGTGAACATGTACCTCCTCCCCGGCCAAAGAGAAAAGCTGCTCGCCCAT
ctctaac putative branch site (score: 2)
ttctattt putative PPT
tgtaaaattctattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtgtttctttcatcaattttcttgtgcttaatatctgacacttacatgttcctctaactgtccattcttcactgttctgtgtaaaattctatttggcagATACGAAGTCATGCACAGAAGTATTTTCTTAAAGTTCAGAAGAAGGGAACAAGTGAACATGTACCTCCTCCCCGGCCAAAGAGAAAAGCTGCTCGCCCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - -cttgtgc
- - - - - - - - - - - - - - - - - -ctgacac
- - - - - - - - - - - - - - - - - - - - - - -catgttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgtcca