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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttatcatattcgcctattttgttttgtcatgttcaatgttgaatactctgttagtaacggtgattctgttacctgcagAGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTT

Basic information

species Glycine max
transcript GLYMA07G06580.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G06580.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv00s0174g00190.t01 (Vitis vinifera), 3'ss of exon 3
------------gttatcatattcgcctattttgttttgtcatgttcaatgttgaatactctgttagtaacggtgattctgttacc-----tgcagAGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTT
              |  |   |||   |||| || |        ||   | | |    |||| ||  | | ||||      || |      || || ||| || || || || ||||||||||||||  |||| ||||| |||||||| || || |||||||| ||||| |||||||| || || |||
gtatagtattcctcttgccccttcaaatattgtggtagcctccttttggtttggttagctctattt-tgatggtgtgctatttgcaaatcgtgtagCGGGCAAGACAGACTATCGTGCCAGGATTCGCCTGATCAATCAAGACAAGAATAAGTACAACACTCCAAAATATCGATTTGTCGTGCGATTT

upper sequence: GLYMA07G06580.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv05s0094g00870.t01 (Vitis vinifera), 3'ss of exon 2
-------------gttatcatattcgcctattttgttttgtcatgttcaatgttgaatactctgttagtaacggtgattctgttacctgcagAGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTT
              ||   || |||     | | |||||    | |||  |  |      | | |   |     |  |    ||  || |||||||||| || || ||| | || ||||||||  |||||||||| ||||||||||| ||||||||||||||||| || |||||||| || |||
gtattgtactacatttccaatgttcattcttatagtttttgggttttcgtttgttcgctttttatggatttaatttctaaaattgtctacagAGGGAAAGACTGACTACAGGGCTAGGATTCGCCTGATTAATCAAGACAAGAACAAGTATAACACTCCGAAATATCGCTTTGTTGTGCGATTT

upper sequence: GLYMA07G06580.1 (Glycine max), 3'ss of exon 2
lower sequence: PP1S38_329V6.1 (Physcomitrella patens), 3'ss of exon 3
---------------------------------------------------------------------------------------gttatcatattcgcctattttgttttg----tcatgttcaa---tgttgaatactctgttag---taacggtgattctgttacc--tgcagAGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTT
                                                                                       |||   ||  | |  | ||| | || |    ||  | ||     |||||  |  |  |   |   | | ||||||   |||     |||||  || ||||||||||||||||| |||||||| |||| ||  ||||| |||||||| || ||||| ||||| ||||| | ||| || || |||
gtgagtgggtttggtttgtgtttgggcatggattgttttgagtgacttgtttgtttttatctttagagtgtttggaattcaattttggttggaatggtggtgtgtttagattagggtttctggctctgggttgttgcgtttttcggaggagctgagggtgatgtggttgttgatgcagCCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTT

upper sequence: GLYMA07G06580.1 (Glycine max), 3'ss of exon 2
lower sequence: PP1S364_3V6.1 (Physcomitrella patens), 3'ss of exon 2
----------------------------------------------------------------------------------gttatcatattcgcctattttgttttgtcatgttcaatgttga-atactctgtta-gtaacggtgattctgttacc------tgcagAGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTT
                                                                                      |  |||        ||| |  | | | |||   || ||  ||    ||||  | | | | |||| |||          |||||  || |||||||||||||| || ||||| || ||||  | ||||||||||||||| || ||||| ||||| ||||| || || ||||| || 
gtgcggatttttttgtggcatttgtcaccctcactgtcgaagatccttgatcttgaatcttttctgtgtgtcgttggtacagagggttgtatcgctggggtttctcgttttaggttttctgctggtatttcttgttgcggatctgagattgtgtgcatggattatgcagCTGGTAAAACCGATTACCGGGCGAGGATCCGTTTGACCACTCAGGACAAGAACAAGTACAACACCCCGAAGTACCGTTTCGTCGTTCGTTTC

upper sequence: GLYMA07G06580.1 (Glycine max), 3'ss of exon 2
lower sequence: EFJ31187 (Selaginella moellendorffii), 3'ss of exon 2
gttatcatattcgcctattttgttttgtcatgttcaatgttgaatactctgttagtaacggtgattctgttacctgcagAGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTT
                 |   | ||||   | ||  |  |||||   ||       |    |  |    | | ||  |||||| || |||||||| || ||  || | || ||||  |||||||||||||||||||| ||||| ||||| |||||||| || |||||||||
----------------gtaacgatttggattcttggagcttgaaatttc-----acatttctcttcgcttcatctctagAGGGCAAGACCGATTATCGGGCTCGGGTGCGCTTGACGAATCAGGACAAGAACAAATACAACACACCGAAGTACCGATTCGTCGTTCGCTTT

upper sequence: GLYMA07G06580.1 (Glycine max), 3'ss of exon 2
lower sequence: EFJ17161 (Selaginella moellendorffii), 3'ss of exon 2
gttatcatattcgcctattttgttttgtcatgttcaatgttgaatactctgttagtaacggtgattctgttacctgcagAGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTT
                 |   | ||||   | ||  |  |||||   ||        ||  |   |||         |||||| || |||||||| || ||  || | || ||||  |||||||||||||||||||| ||||| ||||| |||||||| || |||||||||
----------------gtaacgatttggattcttggagcttgaaatttc--------acattt-ctcttcgcttcatagAGGGCAAGACCGATTATCGGGCTCGGGTGCGCTTGACGAATCAGGACAAGAACAAATACAACACACCGAAGTACCGATTCGTCGTTCGCTTT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7233784|gb|AW569127.1|AW569127
EST:     ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAG                         AGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
genomic: ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAGgttatcatat ... ttacctgcagAGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
EST: gi|193631665|gb|FK582348.1|FK582348
EST:     CAAAAGCC-ACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAG                         AGGG-AAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
genomic: CAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAGgttatcatat ... ttacctgcagAGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
EST: gi|9564071|gb|BE473580.1|BE473580
EST:     ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAG                         AGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
genomic: ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAGgttatcatat ... ttacctgcagAGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
EST: gi|33387329|gb|CA850536.1|CA850536
EST:     ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAG                         AGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
genomic: ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAGgttatcatat ... ttacctgcagAGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
EST: gi|7478382|gb|AW666243.1|AW666243
EST:     ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAG                         AGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
genomic: ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAGgttatcatat ... ttacctgcagAGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
EST: gi|38192446|gb|CF921652.1|CF921652
EST:     ATCAAAAGCCTACTTCAAGAGATGTCAAGTCAAGTTCAAGAGAAGAAGAG                         AGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
genomic: ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAGgttatcatat ... ttacctgcagAGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
EST: gi|192328302|gb|FK020013.1|FK020013
EST:     ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAG                         AGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
genomic: ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAGgttatcatat ... ttacctgcagAGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
EST: gi|192333617|gb|FK025434.1|FK025434
EST:     ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAG                         AGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
genomic: ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAGgttatcatat ... ttacctgcagAGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
EST: gi|151409715|gb|EV279523.1|EV279523
EST:     ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAG                         AGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
genomic: ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAGgttatcatat ... ttacctgcagAGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
EST: gi|10846870|gb|BF069669.1|BF069669
EST:     ATCAAAAGCCTACTTCAAGAGATATCAAGTCAATTTCAAGAGAAGAAGAG                         AGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
genomic: ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAGgttatcatat ... ttacctgcagAGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
EST: gi|192333816|gb|FK025077.1|FK025077
EST:     ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAG                         AGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
genomic: ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAGgttatcatat ... ttacctgcagAGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
EST: gi|26058287|gb|CA801201.1|CA801201
EST:     ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAG-A-A-                         AGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
genomic: ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAGgttatcatat ... ttacctgcagAGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
EST: gi|18721850|gb|BM523372.1|BM523372
EST:     ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAG                         AGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
genomic: ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAGgttatcatat ... ttacctgcagAGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
EST: gi|24205962|gb|BU965215.1|BU965215
EST:     ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAG                         AGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
genomic: ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAGgttatcatat ... ttacctgcagAGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
EST: gi|17964387|gb|BM271123.1|BM271123
EST:     ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAG                         AGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
genomic: ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAGgttatcatat ... ttacctgcagAGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
EST: gi|22523868|gb|BU082679.1|BU082679
EST:     ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAG                         AGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
genomic: ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAGgttatcatat ... ttacctgcagAGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
EST: gi|24205862|gb|BU965115.1|BU965115
EST:     ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAG                         AGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
genomic: ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAGgttatcatat ... ttacctgcagAGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
EST: gi|17153690|gb|BM143623.1|BM143623
EST:     ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAG                         AGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
genomic: ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAGgttatcatat ... ttacctgcagAGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
EST: gi|15285156|gb|BI469047.1|BI469047
EST:     ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAG                         AGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
genomic: ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAGgttatcatat ... ttacctgcagAGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
EST: gi|24205298|gb|BU964551.1|BU964551
EST:     ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAG                         AGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
genomic: ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAGgttatcatat ... ttacctgcagAGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
EST: gi|151397139|gb|EV267012.1|EV267012
EST:     ACCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAG                         AGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
genomic: ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAGgttatcatat ... ttacctgcagAGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
EST: gi|4285594|gb|AI440926.1|AI440926
EST:     ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAG                         AGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
genomic: ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAGgttatcatat ... ttacctgcagAGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
EST: gi|33388021|gb|CA851228.1|CA851228
EST:     ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAG                         AGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
genomic: ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAGgttatcatat ... ttacctgcagAGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
EST: gi|26045622|gb|CA783155.1|CA783155
EST:     ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAG                         AGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
genomic: ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAGgttatcatat ... ttacctgcagAGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
EST: gi|16346338|gb|BI971933.1|BI971933
EST:     ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAG                         AGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
genomic: ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAGgttatcatat ... ttacctgcagAGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
EST: gi|6502218|gb|AW203591.1|AW203591
EST:     ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAG                         AGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
genomic: ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAGgttatcatat ... ttacctgcagAGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
EST: gi|4396042|gb|AI495039.1|AI495039
EST:     ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAG                         AGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
genomic: ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAGgttatcatat ... ttacctgcagAGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
EST: gi|151411465|gb|EV281276.1|EV281276
EST:     ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAG                         AGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
genomic: ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAGgttatcatat ... ttacctgcagAGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
EST: gi|20207598|gb|BQ133687.1|BQ133687
EST:     ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAG                         AGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
genomic: ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAGgttatcatat ... ttacctgcagAGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
EST: gi|38193290|gb|CF922496.1|CF922496
EST:     ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAG                         AGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
genomic: ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAGgttatcatat ... ttacctgcagAGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
EST: gi|38192834|gb|CF922040.1|CF922040
EST:     ATCAAAAGCNTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAG                         AGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
genomic: ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAGgttatcatat ... ttacctgcagAGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
EST: gi|6481795|gb|AW201066.1|AW201066
EST:     ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAG                         AGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
genomic: ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAGgttatcatat ... ttacctgcagAGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
EST: gi|6567363|gb|AW234974.1|AW234974
EST:     ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAG                         AGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
genomic: ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAGgttatcatat ... ttacctgcagAGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
EST: gi|5753627|gb|AI960914.1|AI960914
EST:     ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAG                         AGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
genomic: ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAGgttatcatat ... ttacctgcagAGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
EST: gi|18692813|gb|BM521661.1|BM521661
EST:     ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAG                         AGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
genomic: ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAGgttatcatat ... ttacctgcagAGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
EST: gi|213590604|gb|DB973335.1|DB973335
EST:     ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAG                         AGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
genomic: ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAGgttatcatat ... ttacctgcagAGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
EST: gi|298199535|gb|HO042898.1|HO042898
EST:     ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAG                         AGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
genomic: ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAGgttatcatat ... ttacctgcagAGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
EST: gi|6665970|gb|AW277429.1|AW277429
EST:     ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAG                         AGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
genomic: ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAGgttatcatat ... ttacctgcagAGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
EST: gi|15662084|gb|BI699455.1|BI699455
EST:     ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAG                         AGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
genomic: ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAGgttatcatat ... ttacctgcagAGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
EST: gi|14259966|gb|BG882874.1|BG882874
EST:     ATCGAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAG                         AGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
genomic: ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAGgttatcatat ... ttacctgcagAGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
EST: gi|23729388|gb|BU762778.1|BU762778
EST:     GTCAAGTTCAAGAGAAGAAGAG                         AGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
genomic: GTCAAGTTCAAGAGAAGAAGAGgttatcatat ... ttacctgcagAGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
EST: gi|17998752|gb|BI119562.1|BI119562
EST:     ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAG                         AGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
genomic: ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAGgttatcatat ... ttacctgcagAGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
EST: gi|151410521|gb|EV280336.1|EV280336
EST:     ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAG                         AGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
genomic: ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAGgttatcatat ... ttacctgcagAGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtcatgttcaatgttgaatactctgttagtaacggtgattctgttacctgcagAGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTT
                            tagtaac  putative branch site (score: 1)
                                        ttctgtt  putative PPT
               ttgaata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttatcatattcgcctattttgttttgtcatgttcaatgttgaatactctgttagtaacggtgattctgttacctgcagAGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC