1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...agtgatgcaaactctgcccaatcttctggatttcctttgtagcgcttgtagctgcttgcatacattataattaaacagctaatcttttatggatttgcagACCTCGGAGGAATTACAGTCATCGACTCAAGCTTCTCATGAGCCCAAGAGTGAACAACCAAACAATCACACAACTGATGCTCCTGTTACAGACACAGGCT
species | Glycine max |
transcript | GLYMA07G06230.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTGAAAGACATGCAGTCAGCCTTCGTTCTGCTGAAATGAAGAACTTGCAG ACCTCGGAGGAATTACAGTCATCGACTCAAGCTTCTCATGAGCCCAAGAGTEST: gi|208115456|gb|GD909917.1|GD909917
genomic: CTGAAAGACATGCAGTCAGCCTTCGTTCTGCTGAAATGAAGAACTTGCAGgttctcctac ... ggatttgcagACCTCGGAGGAATTACAGTCATCGACTCAAGCTTCTCATGAGCCCAAGAGT
EST: CTGAAAGACATGCAGTCAGCCTTCGTTCTGCTGAAATGAAGAACTTGCAG ACCTCGGAGGAATTACAGTCATCGACTCAAGCTTCTCATGAGCCCAAGAGT
genomic: CTGAAAGACATGCAGTCAGCCTTCGTTCTGCTGAAATGAAGAACTTGCAGgttctcctac ... ggatttgcagACCTCGGAGGAATTACAGTCATCGACTCAAGCTTCTCATGAGCCCAAGAGT
ttgtagctgcttgcatacattataattaaacagctaatcttttatggatttgcagACCTCGGAGGAATTACAGTCATCGACTCAAGCTTCTCATGAGCCCAAGAGTGAACAACCAAACAATCACACAACTGATGCTCCTGTTACAGACACAGGCT
agctaat putative branch site (score: 3)
attataattaaacagc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtgatgcaaactctgcccaatcttctggatttcctttgtagcgcttgtagctgcttgcatacattataattaaacagctaatcttttatggatttgcagACCTCGGAGGAATTACAGTCATCGACTCAAGCTTCTCATGAGCCCAAGAGTGAACAACCAAACAATCACACAACTGATGCTCCTGTTACAGACACAGGCT
- tgatgca
- - - - - -ctctgcc
- - - - - - - - - - -tcttctg
- - - - - - - - - - - - - - - - tcctttg
- - - - - - - - - - - - - - - - - - - - - - - - tagctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcataca