Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9203904|gb|BE330128.1|BE330128EST: AAGCAGCTTACTCGTAACAGGAAGTTTCTCACAGTTGTTCCTTTGGTGCT GTACTTGATAGCCTCACACACAACAGACTATCAGAATCCAATGCTGCTCTT
genomic: AAGCAGCTTACTCGTAACAGGAAGTTTCTCACAGTTGTTCCTTTGGTGCTgtaagttctc ... tcattgtcagGTACTTGATAGCCTCACACACAACAGACTATCAGAATCCAATGCTGCTCTT
EST:
gi|9565577|gb|BE475086.1|BE475086EST: AAGCAGCTTACTCGTAACAGGAAGTTTCTCACAGTTGTTCCTTTGGTGCT GTACTTGATAGCCTCACACACAACAGACTATCAGAATCCAATGCTGCTCTT
genomic: AAGCAGCTTACTCGTAACAGGAAGTTTCTCACAGTTGTTCCTTTGGTGCTgtaagttctc ... tcattgtcagGTACTTGATAGCCTCACACACAACAGACTATCAGAATCCAATGCTGCTCTT
EST:
gi|13563533|gb|BG551753.1|BG551753EST: AAGCAGCTTACTCGTAACAGGAAGTTTCTCACAGTTGTTCCTTTGGTGCT GTACTTGATAGCCTCACACACAACAGACTATCAGAATCCAATGCTGCTCTT
genomic: AAGCAGCTTACTCGTAACAGGAAGTTTCTCACAGTTGTTCCTTTGGTGCTgtaagttctc ... tcattgtcagGTACTTGATAGCCTCACACACAACAGACTATCAGAATCCAATGCTGCTCTT
EST:
gi|298177667|gb|HO023686.1|HO023686EST: AAGCAGCTTACTCGTAACAGGAAGTTTCTCACAGTTGTTCCTTTGGTGCT GTACTTGATAGCCTCACACA
genomic: AAGCAGCTTACTCGTAACAGGAAGTTTCTCACAGTTGTTCCTTTGGTGCTgtaagttctc ... tcattgtcagGTACTTGATAGCCTCACACA
EST:
gi|193624523|gb|FK574347.1|FK574347EST: AAGCAGCTTACTCGTAACAGGAAGTTTCTCACAGTTGTTCCTTTGGTGCT GTACTTGATAGCCTCACA
genomic: AAGCAGCTTACTCGTAACAGGAAGTTTCTCACAGTTGTTCCTTTGGTGCTgtaagttctc ... tcattgtcagGTACTTGATAGCCTCACA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttaaaactcaatagttatttactgccttcttttttgttcttttgctcattgtcagGTACTTGATAGCCTCACACACAACAGACTATCAGAATCCAATGCTGCTCTTCAACACTGTTGCAGTGATTGTGCTGGTTGTTGCAAAGTTCCCCCACATG
tttactgccttctttt CT-rich tract
tcaatagttattta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gaaattttgtatattttgaaggttagatagactatagttagaattttaaaactcaatagttatttactgccttcttttttgttcttttgctcattgtcagGTACTTGATAGCCTCACACACAACAGACTATCAGAATCCAATGCTGCTCTTCAACACTGTTGCAGTGATTGTGCTGGTTGTTGCAAAGTTCCCCCACATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG