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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactcttgttcacttttttgcttcattggcatttactttaacatcgaatgacttaaatcatgttgctatatccccttgtggctaggccaaatatgcttatgccaaaacaaggactagtttggtcttaccccacaaaaaaagttgttaatgttcttaggtttcatgtgcagGACCTGGAGCGCCTATGATTTTCAATTGT

Basic information

species Glycine max
transcript GLYMA07G05390.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254344222|gb|GR851025.1|GR851025
EST:     TTTGTCTAGGAGATCAGTTGCTGCTCACCCTTGGCATGATCTTGAAATTG                         GACCTGGAGCGCCTATGATTTTCAATTGT
genomic: TTTGTCTAGGAGATCAGTTGCTGCTCACCCTTGGCATGATCTTGAAATTGgtactcttgt ... tcatgtgcagGACCTGGAGCGCCTATGATTTTCAATTGT
EST: gi|17400209|gb|BM176991.1|BM176991
EST:     TTTGTCTAGGAGATCAGTTGCTGCTCACCCTTGGCATGATCTTGAAATTG                         GACCTGGAGCGCCTATGATTTTCAATTGT
genomic: TTTGTCTAGGAGATCAGTTGCTGCTCACCCTTGGCATGATCTTGAAATTGgtactcttgt ... tcatgtgcagGACCTGGAGCGCCTATGATTTTCAATTGT
EST: gi|254315134|gb|GR830127.1|GR830127
EST:     TTTGTCTAGGAGATCAGTTGCTGCTCACCCTTGGCATGATCTTGAAATTG                         GACCTGGAGCGCCTATGATTTTCAATTGT
genomic: TTTGTCTAGGAGATCAGTTGCTGCTCACCCTTGGCATGATCTTGAAATTGgtactcttgt ... tcatgtgcagGACCTGGAGCGCCTATGATTTTCAATTGT
EST: gi|254344223|gb|GR851026.1|GR851026
EST:     GCATGATC-TGAAATTG                         GACCTGGAGCGCCTATGATTTTCAATTGT
genomic: GCATGATCTTGAAATTGgtactcttgt ... tcatgtgcagGACCTGGAGCGCCTATGATTTTCAATTGT
EST: gi|48574801|gb|CO036084.1|CO036084
EST:     TTTGTCTAGGAGATCAGTTGCTGCTCACCCTTGGCATGATCTTGAAATTG                         GACCTGGAGCGCCTATGATTTTCAATTGT
genomic: TTTGTCTAGGAGATCAGTTGCTGCTCACCCTTGGCATGATCTTGAAATTGgtactcttgt ... tcatgtgcagGACCTGGAGCGCCTATGATTTTCAATTGT
EST: gi|209698574|gb|BW652427.1|BW652427
EST:     TTTGTCTAGGAGATCAGTTGCTGCTCACCCTTGGCATGATCTTGAAATTG                         GACCTGGAGCGCCTATGATTTTCAATTGT
genomic: TTTGTCTAGGAGATCAGTTGCTGCTCACCCTTGGCATGATCTTGAAATTGgtactcttgt ... tcatgtgcagGACCTGGAGCGCCTATGATTTTCAATTGT
EST: gi|151399288|gb|EV269159.1|EV269159
EST:     TTTGTCTAGGAGATCAGTTGCTGCTCACCCTTGGCATGATCTTGAAATTG                         GACCTGGAGCGCCTATGATTTTCAATTGT
genomic: TTTGTCTAGGAGATCAGTTGCTGCTCACCCTTGGCATGATCTTGAAATTGgtactcttgt ... tcatgtgcagGACCTGGAGCGCCTATGATTTTCAATTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtttggtcttaccccacaaaaaaagttgttaatgttcttaggtttcatgtgcagGACCTGGAGCGCCTATGATTTTCAATTGT
                           tgttaat  putative branch site (score: 3)
                  aaaaaaagttgttaat  TA-rich tract