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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatcactcacgaactctcgcacgtgcgtgcgtgcgtgctttcattcactcacatcatcacttcctaaactcagttgattcgcttttcgcttcgcagGCTCGCAAGATCATTGCAATGCTCAGTCAAGATTTTATATTCGACGGCTGCACGATTCTCGTTCACGGATTCTCCCGAGTCGTGCTTCAGATTCTCAAAC

Basic information

species Glycine max
transcript GLYMA07G05070.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G05070.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G084647_T02 (Zea mays), 3'ss of exon 2
gtaaatcactca--cgaactctcgcacgtgcgtgcgtgcgtgctttcattcactcacatcatcacttcctaaactcagttgattcgcttttcgcttcgcagGCTCGCAAGATCATTGCAATGCTCAGTCAAGATTTTATATTCGACGGCTGCACGATTCTCGTTCACGGATTCTCCCGAGTCGTGCTTCAGATTCTCAAAC
|| |  |||  |  | ||   |  ||  ||    |  |  |   | ||   | | |   | |   ||| ||  ||  |  |    | ||||       |||||||||||||  ||||||||||| ||||| |||||||| |  || || || || || || || || || |  ||| |||| || ||  |  |||| || |
gttatccacatatccaaaactttccaattgttatctagtttctgtacaagaatttaatccttttgttcttatgcttcggggtcgtgtttttt------cagGCTCGCAAGACAATTGCAATGCTTAGTCAGGATTTTATTTATGATGGGTGTACTATACTTGTCCATGGGTATTCCAGAGTAGTACTGGAAGTTCTAAAGC

upper sequence: GLYMA07G05070.1 (Glycine max), 3'ss of exon 2
lower sequence: AT1G72340.1 (Arabidopsis thaliana), 3'ss of exon 2
gtaaatcactc-acgaactctcgcacgtgcgt----gcgtgcgtgctt---tcattcactcacatca-tcacttcctaaactcagttgattcgc-----ttt--tcgcttcgcagGCTCGCAAGATCATTGCAATGCTCAGTCAAGATTTTATATTCGACGGCTGCACGATTCTCGTTCACGGATTCTCCCGAGTCGTGCTTCAGATTCTCAAAC
|||  ||  |  | |   ||| || | |   |    |  |  || | |   ||| | |   | |||| | | |   | |    ||  | ||        |||  |   | |||||||||| | ||| || |||||||| |||||||||||||||||||| || || || ||  | ||||| ||| ||||  |||| || ||  | || || ||  
gtacttccttttatggcttctggctcatatttagtagtttttgtacatatatcaatgaagtagatcaattagtatttgatagaagagggtttataaaggtttggttattgcgcagGCTCGTAGGATTATCGCAATGCTTAGTCAAGATTTTATATTCGATGGTTGTACCATATTGGTTCATGGACTCTCTAGAGTTGTTCTGGAAATACTTAAGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58014278|gb|CX701020.1|CX701020
EST:     AGTCTCGCTTGCTCGAACGCGCCGAAAAGTTCGGCGAAATCTCCTTCAAG                         GCTCGCAAGATCATTGCAATGCTCAGTCAAGATTTTATATTCGACGGCTGC
genomic: AGTCTCGCTTGCTCGAACGCGCCGAAAAGTTCGGCGAAATCTCCTTCAAGgtaaatcact ... cgcttcgcagGCTCGCAAGATCATTGCAATGCTCAGTCAAGATTTTATATTCGACGGCTGC
EST: gi|11413537|gb|BF425548.1|BF425548
EST:     ATCTCCTTCAAG                         GCTCGCAAGATCATTGCAATGCTCAGTCAAGATTTTATATTCGACGGCTGC
genomic: ATCTCCTTCAAGgtaaatcact ... cgcttcgcagGCTCGCAAGATCATTGCAATGCTCAGTCAAGATTTTATATTCGACGGCTGC
EST: gi|58017505|gb|CX704247.1|CX704247
EST:     AGTCTCGCTTGCTCGAACGCGCCGAAAAGTTCGGCGAAATCTCCTTCAAG                         GCTCGCAAGATCATTGCAATGCTCAGTCAAGATTTTATATTCGACGGCTGC
genomic: AGTCTCGCTTGCTCGAACGCGCCGAAAAGTTCGGCGAAATCTCCTTCAAGgtaaatcact ... cgcttcgcagGCTCGCAAGATCATTGCAATGCTCAGTCAAGATTTTATATTCGACGGCTGC
EST: gi|58017653|gb|CX704395.1|CX704395
EST:     AGTCTCGCTTGCTCGAACGCGCCGAAAAGTTCGGCGAAATCTCCTTCAAG                         GCTCGCAAGATCATTGCAATGCTCAGTCAAGATTTTATATTCGACGGCTGC
genomic: AGTCTCGCTTGCTCGAACGCGCCGAAAAGTTCGGCGAAATCTCCTTCAAGgtaaatcact ... cgcttcgcagGCTCGCAAGATCATTGCAATGCTCAGTCAAGATTTTATATTCGACGGCTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattcactcacatcatcacttcctaaactcagttgattcgcttttcgcttcgcagGCTCGCAAGATCATTGCAATGCTCAGTCAAGATTTTATATTCGACGGCTGCACGATTCTCGTTCACGGATTCTCCCGAGTCGTGCTTCAGATTCTCAAAC
                                    ttcgcttttcgcttc  CT-rich tract