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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtaccctattttcatatgcagttatatgaagaaaaaaagatacatttgattctagtcacatgtggtttgattgattgttgatgtagtttatggtgtgattgtttgtttagggttgttgtattgcccgtgttgtgttgttaatgtatgtttgttggtttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGACACCGATTCACCTATGAGGTACGTGGACATTGGAATTCCTGCCAACAACA

Basic information

species Glycine max
transcript GLYMA07G04890.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G04890.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os07g42450.1 (Oryza sativa), 3'ss of exon 2
gttagtaccctattttcatatgcagttatatgaagaaaaaaagatacatttgattctagtcacatgtggtttgattgattgttgatgtagtttatggtgtgattgtttgtttagggttg--ttgtattgcccgtgttgtgt-tgttaatgtatgtttgttggtttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGACACCGATTCACCTATGAGGTACGTGGACATTGGAATTCCTGCCAACAACA
                                                                                     |    |||   || || ||| ||||||   | |   |||   ||||  |   |||     | | |  ||  |||||   ||||| ||||| ||||||||  |||| ||||| || ||||| |||||||| ||||||||||| || || || ||| | || || || ||||| |||||||| |||||||
------------------------------------------------------------------------------------gtaagattt-cagtatgtttgattgtttcttggtaatttgatctgccaattgagtgcactctcaagcctgcctgttgtaatgtgtacagCCAATTAAGGAGTCTGCACTTGGAAACATTCCTACCATTGCCTTCTGTGACACTGACTCTCCAATGCGCTATGTTGATATTGGTATTCCTGCTAACAACA

upper sequence: GLYMA07G04890.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os03g28410.1 (Oryza sativa), 3'ss of exon 2
gttagtaccctattttcatatgcagttatatgaagaaaaaaagatacatttgattctagtcacatgtggtttgattgattgttgatgtagtttatggtgtgattgtttgtttagggttgttgtattgcccgtgttgtgttgttaatgtatgtttgttggtttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGACACCGATTCACCTATGAGGTACGTGGACATTGGAATTCCTGCCAACAACA
                                                                                   | | || ||| |    |||    |  |||    | |   |       ||||| | | | |      |||||    |||| ||||||||| || |||||  |||||||||| || || ||||| ||||||||||||||||| ||||| || ||| | || || |||||||                  
-----------------------------------------------------------------------------------gttata-tttgttccatgagcactcttttgcaatggagtttgcatatgtgtt-tatagctgtcaattgttttgatgttt-tgtgcagCCAATCAAGGAGTCTGCTCTTGGAAACATCCCCACTATTGCTTTCTGTGACACTGATTCTCCCATGCGCTATGTCGACATTG------------------

upper sequence: GLYMA07G04890.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G126821_T02 (Zea mays), 3'ss of exon 1
gttagtaccctattttcatatgcagttatatgaagaaaaaaagatacatttgattctagtcacatgtggtttgattgattgttgatgtagtttatggtgtgattgtttgtttagggttgttgtattg--cccgtgttgtgttgttaatgta--tgtt-tgttggt--ttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGACACCGATTCACCTATGAGGTACGTGGACATTGGAATTCCTGCCAACAACA
                                                                                ||  |   | |||   || | |  |||     |   ||  ||  | |  || |   |||| || | |  ||  |||| || ||||  |||| ||||||| ||||||||  ||||||| ||||| || ||||||||||| |||||||| || || || || ||| |||| || || || || || || || |||||||
--------------------------------------------------------------------------------gtgaacagaattt-cagtttcaaagttcagaaatatttagtgagtggaccctgcagtgtgatggtgaactaattgttatggtggtgattgtttgcagCCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGATACTGACTCTCCCATGCGGTATGTCGATATCGGCATCCCAGCGAACAACA

upper sequence: GLYMA07G04890.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G159237_T03 (Zea mays), 3'ss of exon 1
gttagtaccctattttcatatgcagttatatgaagaaaaaaagatacatttgattctagtcacatgtggtttgattgattgttgatgtagtttatggtgtgattgtttgtttagggttgttgtattgcccgtgttgtgttgttaatgtatgtttgttggtttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGACACCGATTCACCTATGAGGTACGTGGACATTGGAATTCCTGCCAACAACA
                                                                    ||   | | ||   || || |    |   |  ||  ||     | || ||| ||  |       |  |  ||   ||| |   ||        | ||| ||||| ||||||||  |||| ||||| || ||||||||||| || |||||||| || ||||| |||||| | || || || || || ||||| ||||| ||||
--------------------------------------------------------------------gtaaaacttatatctgttgaaagaaaaacta-gagcgtgcaactcggtttgctgattca-----gaggactttaaaatcttctttatccaaactttgtacagCCCATTAAGGAGTCTGCGCTTGGAAACATTCCCACCATCGCCTTCTGTGATACTGATTCCCCTATGCGCTATGTTGATATCGGCATTCCCGCCAATAACA

upper sequence: GLYMA07G04890.1 (Glycine max), 3'ss of exon 2
lower sequence: AT1G72370.2 (Arabidopsis thaliana), 3'ss of exon 2
gttagtaccctattttcatatgcagttatatgaagaaaaaaagatacatttgattctagtcacatgtggtttgattgattgttgatgtagtttatggtgtgattgtttgtttagggttgttgtattgcccgtgttgtgttgttaatgtatgtttgttggtttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGACACCGATTCACCTATGAGGTACGTGGACATTGGAATTCCTGCCAACAACA
                                                                          |  | | || || |  || ||  |   | || ||| |||  | |               || |||| || ||  |||| | |  || ||| |||||||||| ||||||| |||| | || || ||||| | |||||||||||||||||| || || || ||||| |  || |||||||| || || ||||||||||
-------------------------------------------------------------------------gtaaactcttcatatgattcata-tactagtgattgattaatgat---------------ttttgttattgataaatgtct-tgtgtgtgt-tgcagCCTATCAAGGAAGGTGCTTTGGGAAACATTCCAATCATTGCTTTCTGTGACACAGACTCTCCAATGAGATTTGTTGACATTGGTATCCCAGCCAACAACA

upper sequence: GLYMA07G04890.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv09s0002g00610.t01 (Vitis vinifera), 3'ss of exon 2
gttagtaccctattttcatatgcagttatatgaagaaaaaaagatacatttgattctagtcacatgtggtttgattgattgttgatgtagtttatggtgtgattgtttgtttagggttgttgtattgcccgtgttgtgttgttaatgtatgtttgttggtttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGACACCGATTCACCTATGAGGTACGTGGACATTGGAATTCCTGCCAACAACA
                                                               || | | || ||  | | ||    | || ||  || ||| | | ||||  | ||| || || | |  |  || |  |  | ||  |   |   || |||     |||||||||||||||||||| || || || ||||| || ||||||||||||||||| ||||| || ||| |||| || |||||||| || || ||||| ||||
--------------------------------------------------------------tattttggttcatctaat-ttatctttgtatagtgtatgagtttgtgttatgagttatt-tagtccaggatttttacttatcat-cacaataactgtttt-----cagCCTATTAAGGAAGCTGCACTAGGAAACATTCCAACTATTGCTTTCTGTGACACTGATTCCCCAATGCGGTATGTTGACATTGGTATCCCAGCCAATAACA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13789117|gb|BG651708.1|BG651708
EST:     TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAG                         CCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
genomic: TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAGgttagtaccc ... ttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
EST: gi|193316699|gb|FK279041.1|FK279041
EST:     TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAG                         CCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
genomic: TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAGgttagtaccc ... ttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
EST: gi|24136042|gb|BU926552.1|BU926552
EST:     TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAG                         CCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
genomic: TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAGgttagtaccc ... ttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
EST: gi|7146564|gb|AW508486.1|AW508486
EST:     TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAG                         CCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
genomic: TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAGgttagtaccc ... ttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
EST: gi|193682233|gb|FK621315.1|FK621315
EST:     TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAG                         CCTATTAAGGAAG
genomic: TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAGgttagtaccc ... ttgtgtgcagCCTATTAAGGAAG
EST: gi|7041667|gb|AW471619.1|AW471619
EST:     TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAG                         CCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
genomic: TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAGgttagtaccc ... ttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
EST: gi|14258945|gb|BG881853.1|BG881853
EST:     TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAG                         CCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
genomic: TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAGgttagtaccc ... ttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
EST: gi|15815559|gb|BI787834.1|BI787834
EST:     TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAG                         CCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
genomic: TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAGgttagtaccc ... ttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
EST: gi|192314595|gb|FK008131.1|FK008131
EST:     TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAGCAGATCACCAG                         CCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
genomic: TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAGgttagtaccc ... ttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
EST: gi|7685400|gb|AW756048.1|AW756048
EST:     TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAG                         CCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
genomic: TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAGgttagtaccc ... ttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
EST: gi|298185188|gb|HO030401.1|HO030401
EST:     TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAG                         CCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTG
genomic: TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAGgttagtaccc ... ttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTG
EST: gi|18040290|gb|BM308584.1|BM308584
EST:     TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAG                         CCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
genomic: TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAGgttagtaccc ... ttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
EST: gi|120529097|gb|EH257231.1|EH257231
EST:     TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAG                         CCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
genomic: TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAGgttagtaccc ... ttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
EST: gi|9203809|gb|BE330033.1|BE330033
EST:     TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAG                         CCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTNTCTGTGAC
genomic: TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAGgttagtaccc ... ttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
EST: gi|105632472|gb|DW246430.1|DW246430
EST:     TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAG                         CCTATTAAGGTAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
genomic: TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAGgttagtaccc ... ttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
EST: gi|254336099|gb|GR841424.1|GR841424
EST:     TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAG                         CCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
genomic: TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAGgttagtaccc ... ttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
EST: gi|298175883|gb|HO015288.1|HO015288
EST:     TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAGCAGATCACCAG                         CCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
genomic: TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAGgttagtaccc ... ttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
EST: gi|208073610|gb|GD869011.1|GD869011
EST:     TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAG                         CCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
genomic: TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAGgttagtaccc ... ttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
EST: gi|18039346|gb|BM307640.1|BM307640
EST:     TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAG                         CCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
genomic: TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAGgttagtaccc ... ttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
EST: gi|10846040|gb|BF069029.1|BF069029
EST:     TCAGCGAGCCTCGTCTGCTTATTCTTACCGATCCAAGAACAGATCACCAG                         CCTATTAAGGAAGCTGCTCTTGGGAATATTGCCACCATTGCTTTCTGTGAC
genomic: TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAGgttagtaccc ... ttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
EST: gi|7640609|gb|AW734836.1|AW734836
EST:     TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAG                         CCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
genomic: TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAGgttagtaccc ... ttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
EST: gi|298191528|gb|HO039007.1|HO039007
EST:     TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAG                         CCTATTAAGGAAGCTGCTCTTGGGAATATTCCC
genomic: TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAGgttagtaccc ... ttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATTCCC
EST: gi|298175680|gb|HO015199.1|HO015199
EST:     TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAG                         CCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
genomic: TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAGgttagtaccc ... ttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
EST: gi|193639324|gb|FK586111.1|FK586111
EST:     TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAG                         CCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
genomic: TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAGgttagtaccc ... ttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
EST: gi|209709185|gb|BW657154.1|BW657154
EST:     TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAG                         CCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGA
genomic: TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAGgttagtaccc ... ttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGA
EST: gi|213587172|gb|DB959551.1|DB959551
EST:     TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAG                         CCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
genomic: TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAGgttagtaccc ... ttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
EST: gi|298172342|gb|HO019382.1|HO019382
EST:     TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAG                         CCTATTAAGGAAGCTGCTCTTGGGAATATTCCCA
genomic: TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAGgttagtaccc ... ttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCA
EST: gi|11274923|gb|BF325248.1|BF325248
EST:     TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAA                         CCTATTAAGGAAGCTGCTCTTGGGAATATTTCCCACCATTGCTT-CTGTGA
genomic: TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAGgttagtaccc ... ttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATT-CCCACCATTGCTTTCTGTGA
EST: gi|21638872|gb|BM139918.1|BM139918
EST:     TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAG                         CCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
genomic: TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAGgttagtaccc ... ttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
EST: gi|213620374|gb|DB957271.1|DB957271
EST:     TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAG                         CCTATTAAGGAAGCTGCTCTTGGGA
genomic: TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAGgttagtaccc ... ttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGA
EST: gi|208285884|gb|GE087398.1|GE087398
EST:     TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAG                         CCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
genomic: TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAGgttagtaccc ... ttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
EST: gi|193441002|gb|FK406463.1|FK406463
EST:     CGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAG                         CCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
genomic: CGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAGgttagtaccc ... ttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
EST: gi|6134605|gb|AW132998.1|AW132998
EST:     TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAG                         CCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
genomic: TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAGgttagtaccc ... ttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
EST: gi|193372226|gb|FK335443.1|FK335443
EST:     TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAG                         CCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
genomic: TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAGgttagtaccc ... ttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
EST: gi|193721027|gb|FK661291.1|FK661291
EST:     TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAG                         CCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
genomic: TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAGgttagtaccc ... ttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
EST: gi|8827479|gb|BE211209.1|BE211209
EST:     TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAG                         CCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
genomic: TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAGgttagtaccc ... ttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
EST: gi|31561543|gb|CD487381.1|CD487381
EST:     TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAG                         CCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
genomic: TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAGgttagtaccc ... ttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
EST: gi|254329049|gb|GR833421.1|GR833421
EST:     TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAG                         CCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
genomic: TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAGgttagtaccc ... ttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
EST: gi|23064231|gb|BU579004.1|BU579004
EST:     TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAG                         CCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
genomic: TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAGgttagtaccc ... ttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
EST: gi|193697213|gb|FK634897.1|FK634897
EST:     AAGAACAGATCACCAG                         CCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
genomic: AAGAACAGATCACCAGgttagtaccc ... ttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
EST: gi|193435181|gb|FK404091.1|FK404091
EST:     TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAG                         CCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
genomic: TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAGgttagtaccc ... ttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
EST: gi|254348666|gb|GR852345.1|GR852345
EST:     TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAG                         CCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
genomic: TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAGgttagtaccc ... ttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
EST: gi|9564273|gb|BE473782.1|BE473782
EST:     TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAG                         CCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
genomic: TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAGgttagtaccc ... ttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
EST: gi|7924481|gb|AW830507.1|AW830507
EST:     TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAG                         CCTATTAAAGAAGCTGCTCTTGGGAATATTCCCACCATTGCTNTCTGTGAC
genomic: TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAGgttagtaccc ... ttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
EST: gi|24135380|gb|BU925881.1|BU925881
EST:     TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAG                         CCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
genomic: TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAGgttagtaccc ... ttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
EST: gi|15661648|gb|BI699019.1|BI699019
EST:     TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAG                         CCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
genomic: TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAGgttagtaccc ... ttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
EST: gi|213607814|gb|DB959125.1|DB959125
EST:     TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAG                         CCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
genomic: TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAGgttagtaccc ... ttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
EST: gi|151397143|gb|EV267016.1|EV267016
EST:     TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAG                         CCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
genomic: TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAGgttagtaccc ... ttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
EST: gi|16346589|gb|BI972184.1|BI972184
EST:     TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAG                         CCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
genomic: TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAGgttagtaccc ... ttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
EST: gi|5760667|gb|AI966030.1|AI966030
EST:     TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAG                         CCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
genomic: TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAGgttagtaccc ... ttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
EST: gi|58019522|gb|CX706264.1|CX706264
EST:     TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAG                         CCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
genomic: TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAGgttagtaccc ... ttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
EST: gi|13562631|gb|BG550851.1|BG550851
EST:     TAGCGAGCCCCGTCTTCTTATTTTTACCCG-TCCAAGGACAGATCACCAG                         CCGATTAAGGAA
genomic: CAGCGAGCCTCGTCTCCTTATTCTTACC-GATCCAAGAACAGATCACCAGgttagtaccc ... ttgtgtgcagCCTATTAAGGAA
EST: gi|209702182|gb|BW664624.1|BW664624
EST:     TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAG                         CCTATTAAGGAAGCTGCTCTTGGGGATATTCCCACCATTGCTTTCTGT
genomic: TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAGgttagtaccc ... ttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGT
EST: gi|193616498|gb|FK569768.1|FK569768
EST:     CAGCGAGCCTCGTCTCCCTTATTCTTACCGATCCAAGAACAGATCACCAG                         CCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
genomic: CAGCGAGCCTCGTCT-CCTTATTCTTACCGATCCAAGAACAGATCACCAGgttagtaccc ... ttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
EST: gi|192314596|gb|FK008132.1|FK008132
EST:     TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAGCAGATCACCAG                         CCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
genomic: TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAGgttagtaccc ... ttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
EST: gi|6915837|gb|AW397367.1|AW397367
EST:     TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAG                         CCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
genomic: TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAGgttagtaccc ... ttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
EST: gi|120529603|gb|EH257737.1|EH257737
EST:     TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAG                         CCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
genomic: TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAGgttagtaccc ... ttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
EST: gi|58016477|gb|CX703219.1|CX703219
EST:     TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAG                         CCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
genomic: TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAGgttagtaccc ... ttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
EST: gi|14259416|gb|BG882324.1|BG882324
EST:     TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAG                         CCTATTAAGGAAGCTGCTCTTGGGAATAT
genomic: TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAGgttagtaccc ... ttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATAT
EST: gi|8282687|gb|BE020248.1|BE020248
EST:     TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAG                         CCTATTAAGGAAGCTGCTCTTGGGAATATGCCCACCATTGCTTTCTGTGAC
genomic: TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAGgttagtaccc ... ttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
EST: gi|24136480|gb|BU926990.1|BU926990
EST:     TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAG                         CCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
genomic: TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAGgttagtaccc ... ttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
EST: gi|209699418|gb|BW664138.1|BW664138
EST:     TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAG                         CCTATTAAGGAAGCTGCTCTTGG
genomic: TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAGgttagtaccc ... ttgtgtgcagCCTATTAAGGAAGCTGCTCTTGG
EST: gi|209713305|gb|BW684392.1|BW684392
EST:     TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAG                         CCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC
genomic: TCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAGgttagtaccc ... ttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgttgtattgcccgtgttgtgttgttaatgtatgtttgttggtttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGACACCGATTCACCTATGAGGTACGTGGACATTGGAATTCCTGCCAACAACA
                        tgttaat  putative branch site (score: 3)
                          ttaatgtat  TA-rich tract