1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...tgttctgttgtgtgggaactatttgattcgagtgcctggtgaattgtgttccttaagttttattttctatatttataattgtggttgtttatttggttagATGTGTGGAAAACTCAATTCCACGAGTCTTCAACAACAAGAAGTGTCTTTGAACCGGCCTCCAGCTTTAAT
species | Glycine max |
transcript | GLYMA07G03930.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGTTCGTTGGTTTTCCGGCGATGCTCAATCCTCTCTCAACCGAAACCGCG ATGTGTGGAAAACTCAATTCCACGAGTCTTCAACAACAAGAAGTGTCTTTGEST: gi|19269403|gb|BM885659.1|BM885659
genomic: GGTTCGTTGGTTTTCCGGCGATGCTCAATCCTCTCTCAACCGAAACCGCGgtaactgctt ... atttggttagATGTGTGGAAAACTCAATTCCACGAGTCTTCAACAACAAGAAGTGTCTTTG
EST: GGTTCGTTGGTTTTCCGGCGATGCTCAATCCTCTCTCAACCGAAACCGCG ATGTGTGGAAAACTCAATTCCACGAGTCTTCAACAACAAGAAGTGTCTTTGEST: gi|209714755|gb|BW654105.1|BW654105
genomic: GGTTCGTTGGTTTTCCGGCGATGCTCAATCCTCTCTCAACCGAAACCGCGgtaactgctt ... atttggttagATGTGTGGAAAACTCAATTCCACGAGTCTTCAACAACAAGAAGTGTCTTTG
EST: GGTTCGTTGGTTTTCCGGCGATGCTCAATCCTCTCTCAACCGAAACCGCG ATGTGTGGAAAACTCAATTCCACGAGTCTTCAACAACAAGAAGTGTCTTTG
genomic: GGTTCGTTGGTTTTCCGGCGATGCTCAATCCTCTCTCAACCGAAACCGCGgtaactgctt ... atttggttagATGTGTGGAAAACTCAATTCCACGAGTCTTCAACAACAAGAAGTGTCTTTG
gtgttccttaagttttattttctatatttataattgtggttgtttatttggttagATGTGTGGAAAACTCAATTCCACGAGTCTTCAACAACAAGAAGTGTCTTTGAACCGGCCTCCAGCTTTAAT
tttattt CT-rich tract
ttttattttctatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttctgttgtgtgggaactatttgattcgagtgcctggtgaattgtgttccttaagttttattttctatatttataattgtggttgtttatttggttagATGTGTGGAAAACTCAATTCCACGAGTCTTCAACAACAAGAAGTGTCTTTGAACCGGCCTCCAGCTTTAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- ttctgtt
- - - - -gtgtggg
- - - - - - - - - - - - - - - -gtgcctg
- - - - - - - - - - - - - - - - - - - - - - tgtgttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtggttg