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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcaataatgttcctggaattaaagtgatgttgctgctgcatgggatgttgcttaaagtttaagggttttagtatcaagcttaaggttttttattttacagGGGATGTTGCTTTTAGAATCTTGGAGAGCATACACAAAGTTAAGCTGAGAGGACTTCGAGGTGCTTTTCAAGATACTTTAGAGGCAGAAACTCAGATATA

Basic information

species Glycine max
transcript GLYMA07G03210.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208078753|gb|GD876173.1|GD876173
EST:     GCTGAATCCATTTCCTGGAATGAAGCATCTTGATGTTGCTGGTGGCACAG                         GGGATGTTGCTTTTAGAATCTTGGAGAGCATACACAAAGTTAAGCTGAGAG
genomic: GCTGAATCCATTTCCTGGAATGAAGCATCTTGATGTTGCTGGTGGCACAGgtctgttaca ... tattttacagGGGATGTTGCTTTTAGAATCTTGGAGAGCATACACAAAGTTAAGCTGAGAG
EST: gi|7028434|gb|AW458217.1|AW458217
EST:     GATGTTGCTGGTGGCACAG                         GGGATGTTGCTTTTAGAATCTTGGAGAGCATACACAAAGTTAAGCTGAGAG
genomic: GATGTTGCTGGTGGCACAGgtctgttaca ... tattttacagGGGATGTTGCTTTTAGAATCTTGGAGAGCATACACAAAGTTAAGCTGAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttgcttaaagtttaagggttttagtatcaagcttaaggttttttattttacagGGGATGTTGCTTTTAGAATCTTGGAGAGCATACACAAAGTTAAGCTGAGAGGACTTCGAGGTGCTTTTCAAGATACTTTAGAGGCAGAAACTCAGATATA
                                        ttttttatttt  CT-rich tract
                                  ttaaggttttttattt  TA-rich tract