1 5' 3' | 2 5' 3' | 3 5' 3' |
gtatacctaaaaacttttttttattttttatttgtggatagattagtagtcacatttcttatctgccttctcatactctgttgattcaactacggtgtttcctaatttttttatcattcaagGATGTTGGGAACTCCAACAGAGGAGAATTGGCCAGGAGTTACTTCTCTGCGTGATTGGCATGTGTACCCACGCTGGGAACCTCAGAGCTTGGCAAAGAAT
species | Glycine max |
transcript | GLYMA07G02400.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCTTTGTTTCCGGGGGATTCTGAGTTCCAGCAGCTCATTCACATATTCAG GATGTTGGGAACTCCAACAGAGGAGAATTGGCCAGGAGTTACTTCTCTGCGEST: gi|51337876|gb|CO981742.1|CO981742
genomic: GCTTTGTTTCCGGGGGATTCTGAGTTCCAGCAGCTCATTCACATATTCAAgtatacctaa ... atcattcaagGATGTTGGGAACTCCAACAGAGGAGAATTGGCCAGGAGTTACTTCTCTGCG
EST: GCTTTGTTTCCGGGGGATTCTGAGTTCCAGCAGCTCATTCACATATTCAA GATGTTGGGAACTCCAACAGAGGAGAATTGGCCAGGAGTTACTTCTCTGCGEST: gi|26045718|gb|CA783217.1|CA783217
genomic: GCTTTGTTTCCGGGGGATTCTGAGTTCCAGCAGCTCATTCACATATTCAAgtatacctaa ... atcattcaagGATGTTGGGAACTCCAACAGAGGAGAATTGGCCAGGAGTTACTTCTCTGCG
EST: GCTTTGTTTCCGGGGGATTCTGAGTTCCAGCAGCTCATTCACATATTCAA GATGTTGGGAACTCCAACAGAGGAGAATTGGCCAGGAGTTACTTCTCTGCG
genomic: GCTTTGTTTCCGGGGGATTCTGAGTTCCAGCAGCTCATTCACATATTCAAgtatacctaa ... atcattcaagGATGTTGGGAACTCCAACAGAGGAGAATTGGCCAGGAGTTACTTCTCTGCG
ttctcatactctgttgattcaactacggtgtttcctaatttttttatcattcaagGATGTTGGGAACTCCAACAGAGGAGAATTGGCCAGGAGTTACTTCTCTGCGTGATTGGCATGTGTACCCACGCTGGGAACCTCAGAGCTTGGCAAAGAAT
tcctaat putative branch site (score: 2)
tttttttatcattc CT-rich tract
tttcctaattttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatacctaaaaacttttttttattttttatttgtggatagattagtagtcacatttcttatctgccttctcatactctgttgattcaactacggtgtttcctaatttttttatcattcaagGATGTTGGGAACTCCAACAGAGGAGAATTGGCCAGGAGTTACTTCTCTGCGTGATTGGCATGTGTACCCACGCTGGGAACCTCAGAGCTTGGCAAAGAAT
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