Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacactctttctctcaattttgttaccctaattgcgtttctctcttttccctcgtttcttaacctgtttgttgtgtttttatattttttaacagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTCTATGTGGATCCAGAGGCTAAGCTGTTGTTTATTATTCGCATTCGTGG

Basic information

species Glycine max
transcript GLYMA07G02270.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G02270.1 (Glycine max), 3'ss of exon 2
lower sequence: AT2G01250.1 (Arabidopsis thaliana), 3'ss of exon 2
gtacactctttctctcaattttgttaccctaattgcgtttctctcttttccctcgtttctt--aacctgt--ttgttgtgtttttatattttttaacagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTCTATGTGGATCCAGAGGCTAAGCTGTTGTTTATTATTCGCATTCGTGG
                             |||     ||| ||             | |||  || ||||  ||| | |  | || |||  ||  | |||||||||| |||||   ||||||||||||||||||||| || || ||||||||||| || || || |||||||| ||||| || || || || |||||
----------------------------gtaaacatttttatcctccaaatacaaatacttggaaactgtagttgatcttctcttttatcctt-gatagGAGAAGGAGTTGATCTCGTTGAAACGCGAGGCCAAGCTTAAGGGAGGTTTCTATGTTGACCCTGAAGCTAAGCTCTTGTTCATCATCCGTATCCGTGG

upper sequence: GLYMA07G02270.1 (Glycine max), 3'ss of exon 2
lower sequence: PP1S2_667V6.1 (Physcomitrella patens), 3'ss of exon 1
-------------------gtacactctttctctc--aattttgttaccctaatt--gcgtttctctcttttccctcgtttcttaacctgt-ttgttgtgt--ttttatattttttaacagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTCTATGTGGATCCAGAGGCTAAGCTGTTGTTTATTATTCGCATTCGTGG
                     ||| ||  |||     ||      | |  |   |  | ||| |             |||||  |   ||   || || ||  ||      | |  | ||||||   ||  |||| ||  ||||  | || || |||||||| ||||| ||||||||||| || ||||| |||||  ||||| ||||||| ||||||||
gtcagatgtgctgcgatgctcacagtcgatctggtggaaacagagtgctttgcatcagggttgccaaggggcttagggtttcacagtttggactgatgggtggttcctggatgtggagcagGAGTCTGATCTGATCCGACTGAAGAGAGAAGCGAAGCTGAAGGGTGGATTCTATGTGGAGCCTGAGGCCAAGCTCATGTTTGTTATTCGTATTCGTGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298191175|gb|HO038654.1|HO038654
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacactctt ... tttttaacagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
EST: gi|298183073|gb|HO028336.1|HO028336
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacactctt ... tttttaacagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
EST: gi|7925315|gb|AW831402.1|AW831402
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacactctt ... tttttaacagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
EST: gi|213595918|gb|DB955982.1|DB955982
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacactctt ... tttttaacagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
EST: gi|298191806|gb|HO035888.1|HO035888
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCGAGCTGAAAGGTGGTTTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacactctt ... tttttaacagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
EST: gi|213594462|gb|DB970028.1|DB970028
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacactctt ... tttttaacagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
EST: gi|209704639|gb|BW656645.1|BW656645
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacactctt ... tttttaacagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
EST: gi|12687947|gb|BG154222.1|BG154222
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacactctt ... tttttaacagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
EST: gi|151410201|gb|EV280016.1|EV280016
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacactctt ... tttttaacagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
EST: gi|9204281|gb|BE330505.1|BE330505
EST:     CAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
genomic: CAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacactctt ... tttttaacagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
EST: gi|7924220|gb|AW830246.1|AW830246
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacactctt ... tttttaacagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
EST: gi|13481356|gb|BG510699.1|BG510699
EST:     GTACGATCACCAG                         GAGAAGGAATTGATTCGGTTG-ATCGCGAGGCCAAGCTGAAAGGTGGTTTC
genomic: GTACGATCACCAGgtacactctt ... tttttaacagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
EST: gi|192302088|gb|FG995222.1|FG995222
EST:     AGCTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacactctt ... tttttaacagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
EST: gi|209722062|gb|BW659304.1|BW659304
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacactctt ... tttttaacagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
EST: gi|213588560|gb|DB957624.1|DB957624
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacactctt ... tttttaacagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
EST: gi|8402365|gb|BE057999.1|BE057999
EST:     AACTCATCTACAACAGAGCTAAGCATTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAACC-GAAAGGTGGTTT
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacactctt ... tttttaacagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTT
EST: gi|213617535|gb|DB969247.1|DB969247
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGG--TACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacactctt ... tttttaacagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
EST: gi|151394375|gb|EV264246.1|EV264246
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacactctt ... tttttaacagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
EST: gi|298185258|gb|HO030471.1|HO030471
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacactctt ... tttttaacagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
EST: gi|5057333|gb|AI735809.1|AI735809
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacactctt ... tttttaacagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
EST: gi|208270715|gb|GE070521.1|GE070521
EST:     AACTCATCTACAACAGAGCTAGGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacactctt ... tttttaacagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
EST: gi|15814466|gb|BI786741.1|BI786741
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacactctt ... tttttaacagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
EST: gi|15286026|gb|BI469917.1|BI469917
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacactctt ... tttttaacagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
EST: gi|254326340|gb|GR840932.1|GR840932
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacactctt ... tttttaacagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
EST: gi|298195571|gb|HO043962.1|HO043962
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCGCCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacactctt ... tttttaacagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
EST: gi|192330146|gb|FK019786.1|FK019786
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCGAGCTGAAAGGTGGTTTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacactctt ... tttttaacagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
EST: gi|192317146|gb|FK009761.1|FK009761
EST:     GCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
genomic: GCAGTACGCTAAGGAGTACGATCACCAGgtacactctt ... tttttaacagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
EST: gi|298173986|gb|HO017322.1|HO017322
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacactctt ... tttttaacagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
EST: gi|213616677|gb|DB969187.1|DB969187
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacactctt ... tttttaacagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
EST: gi|13181260|gb|BG352600.1|BG352600
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacactctt ... tttttaacagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
EST: gi|192317131|gb|FK009760.1|FK009760
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacactctt ... tttttaacagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
EST: gi|22540336|gb|BU090179.1|BU090179
EST:     CTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
genomic: CTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacactctt ... tttttaacagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
EST: gi|254326341|gb|GR840933.1|GR840933
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacactctt ... tttttaacagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
EST: gi|213617865|gb|DB967283.1|DB967283
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacactctt ... tttttaacagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
EST: gi|298163026|gb|HO011759.1|HO011759
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacactctt ... tttttaacagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
EST: gi|51338534|gb|CO982400.1|CO982400
EST:     TAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
genomic: TAAGGAGTACGATCACCAGgtacactctt ... tttttaacagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
EST: gi|151411624|gb|EV281435.1|EV281435
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacactctt ... tttttaacagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
EST: gi|5058211|gb|AI736687.1|AI736687
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacactctt ... tttttaacagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
EST: gi|298179125|gb|HO027596.1|HO027596
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCTCCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacactctt ... tttttaacagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
EST: gi|13477789|gb|BG507528.1|BG507528
EST:     TAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
genomic: TAAGGAGTACGATCACCAGgtacactctt ... tttttaacagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
EST: gi|14258918|gb|BG881835.1|BG881835
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacactctt ... tttttaacagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
EST: gi|17401017|gb|BM177799.1|BM177799
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacactctt ... tttttaacagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
EST: gi|15663259|gb|BI700630.1|BI700630
EST:     GCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
genomic: GCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacactctt ... tttttaacagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
EST: gi|298189027|gb|HO035664.1|HO035664
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacactctt ... tttttaacagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
EST: gi|298182455|gb|HO031190.1|HO031190
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacactctt ... tttttaacagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
EST: gi|6567236|gb|AW234847.1|AW234847
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacactctt ... tttttaacagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
EST: gi|209727903|gb|BW663417.1|BW663417
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacactctt ... tttttaacagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
EST: gi|21601327|gb|BQ611658.1|BQ611658
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacactctt ... tttttaacagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
EST: gi|298197335|gb|HO044814.1|HO044814
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacactctt ... tttttaacagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
EST: gi|9986855|gb|BE660963.1|BE660963
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacactctt ... tttttaacagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
EST: gi|209710592|gb|BW665058.1|BW665058
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacactctt ... tttttaacagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
EST: gi|298188991|gb|HO035716.1|HO035716
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacactctt ... tttttaacagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
EST: gi|151409563|gb|EV279371.1|EV279371
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacactctt ... tttttaacagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
EST: gi|254342198|gb|GR853335.1|GR853335
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacactctt ... tttttaacagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
EST: gi|298165624|gb|HO011673.1|HO011673
EST:     AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAG                         GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC
genomic: AACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGgtacactctt ... tttttaacagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctctcttttccctcgtttcttaacctgtttgttgtgtttttatattttttaacagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTCTATGTGGATCCAGAGGCTAAGCTGTTGTTTATTATTCGCATTCGTGG
                 tcttaac  putative branch site (score: 2)
                                    tttttatatttttt  putative PPT
                         tgtttgttgtgttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacactctttctctcaattttgttaccctaattgcgtttctctcttttccctcgtttcttaacctgtttgttgtgtttttatattttttaacagGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTCTATGTGGATCCAGAGGCTAAGCTGTTGTTTATTATTCGCATTCGTGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT