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...tgctatgaattggtgattaattaaattctttgtctgttgcttacattcgtgaatattttcaaattaatcattaattaaacttagtggtatcaaaatccagGGAAATCTCGGTGGAGCTCGAATAGGAATTGTAGCCAAACCTTCTGCTGAATTTGTTGCTGGAATACTTGGGATTTGGCTTAGTGGAGGTGTTGCTGTTC
species | Glycine max |
transcript | GLYMA07G02180.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CATCGGCACAGAAGATATCTAATCTCTTGTGTGGCAGTGATGCACAGACA GGAAATCTCGGTGGAGCTCGAATAGGAATTGTAGCCAAACCTTCTGCTGAAEST: gi|192295165|gb|FG986884.1|FG986884
genomic: CATCGGCACAGAAGATATCTAATCTCTTGTGTGGCAGTGATGCACAGACAgtgagttaca ... caaaatccagGGAAATCTCGGTGGAGCTCGAATAGGAATTGTAGCCAAACCTTCTGCTGAA
EST: CATCGGCACAGAAGATATCTAATCTCTTGTGTGGCAGTGATGCACAGACA GGAAATCTCGGTGGAGCTCGAATAGGAATTGTAGCCAAACCTTCTGCTGAAEST: gi|37996226|gb|CF807815.1|CF807815
genomic: CATCGGCACAGAAGATATCTAATCTCTTGTGTGGCAGTGATGCACAGACAgtgagttaca ... caaaatccagGGAAATCTCGGTGGAGCTCGAATAGGAATTGTAGCCAAACCTTCTGCTGAA
EST: CATCGGCACAGAAGATATCTAATCTCTTGTGTGGCAGTGATGCACAGACA GGAAATCTCGGTGGAGCTCGAATAGGAATTGTAGCCAAACCTTCTGCTGAAEST: gi|21889136|gb|BQ742349.1|BQ742349
genomic: CATCGGCACAGAAGATATCTAATCTCTTGTGTGGCAGTGATGCACAGACAgtgagttaca ... caaaatccagGGAAATCTCGGTGGAGCTCGAATAGGAATTGTAGCCAAACCTTCTGCTGAA
EST: CATCGGCACAGAAGATATCTAATCTCTTGTGTGGCAGTGATGCACAGACA GGAAATCTCGGTGGAGCTCGAATAGGAATTGTAGCCAAACCTTCTGCTGAA
genomic: CATCGGCACAGAAGATATCTAATCTCTTGTGTGGCAGTGATGCACAGACAgtgagttaca ... caaaatccagGGAAATCTCGGTGGAGCTCGAATAGGAATTGTAGCCAAACCTTCTGCTGAA
ttcgtgaatattttcaaattaatcattaattaaacttagtggtatcaaaatccagGGAAATCTCGGTGGAGCTCGAATAGGAATTGTAGCCAAACCTTCTGCTGAATTTGTTGCTGGAATACTTGGGATTTGGCTTAGTGGAGGTGTTGCTGTTC
cattaat putative branch site (score: 3)
aatattttcaaattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgctatgaattggtgattaattaaattctttgtctgttgcttacattcgtgaatattttcaaattaatcattaattaaacttagtggtatcaaaatccagGGAAATCTCGGTGGAGCTCGAATAGGAATTGTAGCCAAACCTTCTGCTGAATTTGTTGCTGGAATACTTGGGATTTGGCTTAGTGGAGGTGTTGCTGTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
tgctatg
- - - - attggtg
- - - - - - - - - - - - - - - - -ctgttgc
- - - - - - - - - - - - - - - - - - - - -tacattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttagtg