1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtttccctctcaagactctcattctcgtggtgttttttttttctctgtgttttgattgtgacccttcttgctgctgataataatgtttatgccactctgcagGTTCCTTTCTGCCCAATGGTTGGTTCTGAAGTTTACTCCTCAGAAGTAAAGAAGACCGAGGTTCTCATGGAAAATTTTAGACGGGCCATTGGTCTGCGTA
species | Glycine max |
transcript | GLYMA07G02170.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCGGCAAGACGGCGTTAGCTCTTGGGATAAGCCAGGAGCTTGGCACCAAG GTTCCTTTCTGCCCAATGGTTGGTTCTGAAGTTTACTCCTCAGAAGTAAAGEST: gi|193614134|gb|FK562218.1|FK562218
genomic: CCGGCAAGACGGCGTTAGCTCTTGGGATAAGCCAGGAGCTTGGCACCAAGgtttccctct ... cactctgcagGTTCCTTTCTGCCCAATGGTTGGTTCTGAAGTTTACTCCTCAGAAGTAAAG
EST: CCGGCAAGACGGCGTTAGCTCTTGGGATAAGCCAGGAGCTTGGCACCAAG GTTCCTTTCTGCCCAATGGTTGGTTCTGAAGTTTACTCCTCAGAAGTAAAGEST: gi|208225428|gb|GE025427.1|GE025427
genomic: CCGGCAAGACGGCGTTAGCTCTTGGGATAAGCCAGGAGCTTGGCACCAAGgtttccctct ... cactctgcagGTTCCTTTCTGCCCAATGGTTGGTTCTGAAGTTTACTCCTCAGAAGTAAAG
EST: CCGGCAAGACGGCGTTAGCTCTTGGGATAAGCCAGGAGCTTGGCACCAAG GTTCCTTTCTGCCCAATGGTTGGTTCTGAAGTTTACTCCTCAGAAGTAAAG
genomic: CCGGCAAGACGGCGTTAGCTCTTGGGATAAGCCAGGAGCTTGGCACCAAGgtttccctct ... cactctgcagGTTCCTTTCTGCCCAATGGTTGGTTCTGAAGTTTACTCCTCAGAAGTAAAG
tgttttgattgtgacccttcttgctgctgataataatgtttatgccactctgcagGTTCCTTTCTGCCCAATGGTTGGTTCTGAAGTTTACTCCTCAGAAGTAAAGAAGACCGAGGTTCTCATGGAAAATTTTAGACGGGCCATTGGTCTGCGTA
tgctgat putative branch site (score: 3)
ccactct putative PPT
tgataataatgtttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttccctctcaagactctcattctcgtggtgttttttttttctctgtgttttgattgtgacccttcttgctgctgataataatgtttatgccactctgcagGTTCCTTTCTGCCCAATGGTTGGTTCTGAAGTTTACTCCTCAGAAGTAAAGAAGACCGAGGTTCTCATGGAAAATTTTAGACGGGCCATTGGTCTGCGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA