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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cgttcttttaccttaatgatcaaggtttttcttcttcttctttttttttttttgtattaattgttgttgtaaaattttcttggttctgtttgttttgcagCACTGGTTTACCAGGAGAAGAAGAGAGAGTTGCATTCAGTCATTTCCAATCAAAAAAGTTAGATGAATGGAATGAACAAATGCTTAACCCATCCTCTATC

Basic information

species Glycine max
transcript GLYMA07G02120.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6667218|gb|AW278677.1|AW278677
EST:     TCTTCTACACAAAACCAAGAGCCCCCTCACTCATTGAGCCAACTTCTTTT                         CACTGGTTTACCAGGAGAAGAAGAGAGAGTTGCATTCAGTCATTTCCAATC
genomic: TCTTCTACACAAAACCAAGAGCCCCCTCACTCATTGAGCCAACTTCTTTTgtaagcactc ... tgttttgcagCACTGGTTTACCAGGAGAAGAAGAGAGAGTTGCATTCAGTCATTTCCAATC
EST: gi|10845564|gb|BF068658.1|BF068658
EST:     TCTTCTACACAAAACCAAGAGCCCCCTCACTCATTGAGCCAACTTCTTTT                         CACTGGTTTACCAGGAGAAGAAGAGAGAGTTGCATTCAGTCATTTCCAATC
genomic: TCTTCTACACAAAACCAAGAGCCCCCTCACTCATTGAGCCAACTTCTTTTgtaagcactc ... tgttttgcagCACTGGTTTACCAGGAGAAGAAGAGAGAGTTGCATTCAGTCATTTCCAATC
EST: gi|213602541|gb|DB956561.1|DB956561
EST:     TCTTCTACACAAAACCAAGAGCCCCCTCACTCATTGAGCCAACTTCTTTT                         CACTGGTTTACCAGGAGAAGAAGAGAGAGTTGCATTCAGTCATTTCCAATC
genomic: TCTTCTACACAAAACCAAGAGCCCCCTCACTCATTGAGCCAACTTCTTTTgtaagcactc ... tgttttgcagCACTGGTTTACCAGGAGAAGAAGAGAGAGTTGCATTCAGTCATTTCCAATC
EST: gi|209722357|gb|BW665843.1|BW665843
EST:     TCTTCTACACAAAACCGAGAGCCCCCTCACTCATTGAGCCAACTTCTTTT                         CACTGGTTTACCAGGAGAAGAAGAGAGAGTTGCATTCAGTCATTTCCAATC
genomic: TCTTCTACACAAAACCAAGAGCCCCCTCACTCATTGAGCCAACTTCTTTTgtaagcactc ... tgttttgcagCACTGGTTTACCAGGAGAAGAAGAGAGAGTTGCATTCAGTCATTTCCAATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttttttgtattaattgttgttgtaaaattttcttggttctgtttgttttgcagCACTGGTTTACCAGGAGAAGAAGAGAGAGTTGCATTCAGTCATTTCCAATCAAAAAAGTTAGATGAATGGAATGAACAAATGCTTAACCCATCCTCTATC
         tattaat  putative branch site (score: 2)
                                      ttctgttt  putative PPT
     tttgtattaattgttg  TA-rich tract