1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...cgttcttttaccttaatgatcaaggtttttcttcttcttctttttttttttttgtattaattgttgttgtaaaattttcttggttctgtttgttttgcagCACTGGTTTACCAGGAGAAGAAGAGAGAGTTGCATTCAGTCATTTCCAATCAAAAAAGTTAGATGAATGGAATGAACAAATGCTTAACCCATCCTCTATC
species | Glycine max |
transcript | GLYMA07G02120.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCTTCTACACAAAACCAAGAGCCCCCTCACTCATTGAGCCAACTTCTTTT CACTGGTTTACCAGGAGAAGAAGAGAGAGTTGCATTCAGTCATTTCCAATCEST: gi|10845564|gb|BF068658.1|BF068658
genomic: TCTTCTACACAAAACCAAGAGCCCCCTCACTCATTGAGCCAACTTCTTTTgtaagcactc ... tgttttgcagCACTGGTTTACCAGGAGAAGAAGAGAGAGTTGCATTCAGTCATTTCCAATC
EST: TCTTCTACACAAAACCAAGAGCCCCCTCACTCATTGAGCCAACTTCTTTT CACTGGTTTACCAGGAGAAGAAGAGAGAGTTGCATTCAGTCATTTCCAATCEST: gi|213602541|gb|DB956561.1|DB956561
genomic: TCTTCTACACAAAACCAAGAGCCCCCTCACTCATTGAGCCAACTTCTTTTgtaagcactc ... tgttttgcagCACTGGTTTACCAGGAGAAGAAGAGAGAGTTGCATTCAGTCATTTCCAATC
EST: TCTTCTACACAAAACCAAGAGCCCCCTCACTCATTGAGCCAACTTCTTTT CACTGGTTTACCAGGAGAAGAAGAGAGAGTTGCATTCAGTCATTTCCAATCEST: gi|209722357|gb|BW665843.1|BW665843
genomic: TCTTCTACACAAAACCAAGAGCCCCCTCACTCATTGAGCCAACTTCTTTTgtaagcactc ... tgttttgcagCACTGGTTTACCAGGAGAAGAAGAGAGAGTTGCATTCAGTCATTTCCAATC
EST: TCTTCTACACAAAACCGAGAGCCCCCTCACTCATTGAGCCAACTTCTTTT CACTGGTTTACCAGGAGAAGAAGAGAGAGTTGCATTCAGTCATTTCCAATC
genomic: TCTTCTACACAAAACCAAGAGCCCCCTCACTCATTGAGCCAACTTCTTTTgtaagcactc ... tgttttgcagCACTGGTTTACCAGGAGAAGAAGAGAGAGTTGCATTCAGTCATTTCCAATC
ttttttttgtattaattgttgttgtaaaattttcttggttctgtttgttttgcagCACTGGTTTACCAGGAGAAGAAGAGAGAGTTGCATTCAGTCATTTCCAATCAAAAAAGTTAGATGAATGGAATGAACAAATGCTTAACCCATCCTCTATC
tattaat putative branch site (score: 2)
ttctgttt putative PPT
tttgtattaattgttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgttcttttaccttaatgatcaaggtttttcttcttcttctttttttttttttgtattaattgttgttgtaaaattttcttggttctgtttgttttgcagCACTGGTTTACCAGGAGAAGAAGAGAGAGTTGCATTCAGTCATTTCCAATCAAAAAAGTTAGATGAATGGAATGAACAAATGCTTAACCCATCCTCTATC
- - - - - - - - - - - - - - - cttcttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggttctg