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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaatctactactctgtttttttattgggtttgtaattaatgatgcccaatccaaatattcaatcttttatttgtatagttttggtaaattgttcttctacgctttcatagatttttctatgtgaaaattatagaatggcgctttctctgcagACTAAGCAGCAGCCAACCAAAGACACAAGCTGTGAATCAGCTGTGACGAGTGGTCAGCAGCACAATTTGACAACTCAACATCCCCCACGGGATGCAAGTC

Basic information

species Glycine max
transcript GLYMA07G01950.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G01950.1 (Glycine max), 3'ss of exon 2
lower sequence: AT1G52150.3 (Arabidopsis thaliana), 3'ss of exon 2
gtaagaatctactactctgtttttttattgggtttgtaattaatgatgcccaatccaaatattcaatctt-ttatttgtatagttttggtaaattgttcttctacgctttcatagatttttctatgtgaaaattatagaatggcgctttctctgcagACTAAGCAGCAGCCAACCAAAGACACAAGCTGTGAATCAGCTGTGACGAGTGGTCAGCAGCACAATTTGACAACTCAACATCCCCCACGGGATGCAAGTC------
                                   || |   ||  | | |   | | || |||| | || |||| |  ||| |      ||  | |||||  |   |   |      |||  |||  |    ||| || | |   ||| | | ||| ||      |  ||| | |||||||||||||||||||| |  |||||||||||||||   ||| | ||| || ||||| |||| |   | ||||| ||||      
-----------------------------------gtgag-gattctactcctgcaatatcttcatttttcttatcttaataatcactagaatgttttctttaagaataataatatccttttaatggtatgtgtatcgatttgtctttttttttcagCCT---TCACTCCCAGCTAAAGACACAAGCTGTGAATCGGTGGTGACGAGTGGTCAG---CACCAATTGGCATCTCAAAATCCTCAGAGAGATGCTAGTCCTGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15663237|gb|BI700608.1|BI700608
EST:     CTCAACTCGTCTATGAAAATGGCTATTTTCGTCAACACACCACCCAAAAT                         ACTAAGCAGCAGCCAACCAAAGACACAAGCTGTGAATCAGCTGTGACGAGT
genomic: CTCAACTCGTCTATGAAAATGGCTATTTTCGTCAACACACCACCCAAAATgtaagaatct ... ttctctgcagACTAAGCAGCAGCCAACCAAAGACACAAGCTGTGAATCAGCTGTGACGAGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacgctttcatagatttttctatgtgaaaattatagaatggcgctttctctgcagACTAAGCAGCAGCCAACCAAAGACACAAGCTGTGAATCAGCTGTGACGAGTGGTCAGCAGCACAATTTGACAACTCAACATCCCCCACGGGATGCAAGTC
                                         cgctttctct  CT-rich tract
             atttttctatgtgaaa  TA-rich tract