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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtagttttagcaaattgcgcgcttaattgttcatctacccttttatagtttttctgtgtgagtgctttagaattgagttagaatggtgctttatttgcagACTACGCAGGCAACCAAAGACACAAACTGTGAATCAGTTGTGACGAGTGGTCAGCAGCACAATTTGATAACTCAACATCCCCCACGGGATGCAAGTCCTG

Basic information

species Glycine max
transcript GLYMA07G01940.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G01940.1 (Glycine max), 3'ss of exon 2
lower sequence: AT1G52150.3 (Arabidopsis thaliana), 3'ss of exon 2
-----------------gtagttttagcaaattgcgcgcttaattgttcatc----tacccttttatagtttttctgtgtgagtgctttagaattgagttagaatggtgctttatttgcagACTACGCAGGCAACCAAAGACACAAACTGTGAATCAGTTGTGACGAGTGGTCAGCAGCACAATTTGATAACTCAACATCCCCCACGGGATGCAAGTCCTG---
                 | | | |   ||  || |     | | |  |||      |    | ||  ||  |     | |   |    | | ||     | || | ||  ||| ||| ||| || | |   || | |||||||||| ||||||||| || ||||||||||||||||| ||    |||  | ||||| |||| |   | ||||| |||||||   
gtgaggattctactcctgcaatatcttcatttttcttatcttaataatcactagaatgttttctttaagaataataatatccttttaatggtatgtgtatcgatttgtctttttttttcagCCTTCACTCCCAGCTAAAGACACAAGCTGTGAATCGGTGGTGACGAGTGGTCAGCACCA---ATTGGCATCTCAAAATCCTCAGAGAGATGCTAGTCCTGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207782405|gb|GD753332.1|GD753332
EST:     TGTCTCAACACGTCTGTGAAAATGGCTATTTTCGTCAACACACCCAGATT                         ACTACGCAGGCAACCAAAGACACAAACTGTGAATCAGTTGTGACGAGTGGT
genomic: TGTCTCAACTCGTCTATGAAAATGGCTATTTTCGTCAACACACCCAGATTgtaagaattt ... ttatttgcagACTACGCAGGCAACCAAAGACACAAACTGTGAATCAGTTGTGACGAGTGGT
EST: gi|207750111|gb|GD726065.1|GD726065
EST:     TGTCTCAACACGTCTGTGAAAATGGCTATTTTCGTCAACACACCCAGATT                         ACTACGCAGGCAACCAAAGACACAAACTGTGAATCAGTTGTGACGAGTGGT
genomic: TGTCTCAACTCGTCTATGAAAATGGCTATTTTCGTCAACACACCCAGATTgtaagaattt ... ttatttgcagACTACGCAGGCAACCAAAGACACAAACTGTGAATCAGTTGTGACGAGTGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagtttttctgtgtgagtgctttagaattgagttagaatggtgctttatttgcagACTACGCAGGCAACCAAAGACACAAACTGTGAATCAGTTGTGACGAGTGGTCAGCAGCACAATTTGATAACTCAACATCCCCCACGGGATGCAAGTCCTG
                                           ctttattt  CT-rich tract
                    tttagaatt  TA-rich tract