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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtctaattttttcttcagcaatttcttttataactaaaattactaacttaggttttaaagattctactttacacccttaattttctaatatctatgtatactgtaacttgcagCATCACGGATCAAGAAGGGACTTGGAGAGGATGGACTATTCTATTAGTAGACATCCTGAGTTCCGTTATAAAACAGAGTTTCAGAGTCATGAGCCTGAG

Basic information

species Glycine max
transcript GLYMA07G01440.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G01440.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G069631_T02 (Zea mays), 3'ss of exon 2
gtaagtctaattttttcttcagcaatttcttttataactaaaattactaacttaggttttaaagattctactttacacccttaattttctaatatctatgtatactgtaacttgcagCATCACGGATCAAGAAGGGACTTGGAGAGGATGGACTATTCTATTAGTAGACATCCTGAGTTCCGTTATAAAACAGAGTTTCAGAGTCATGAGCCTGAG
                                  ||| |   |  ||||   || ||| || |      |  || |   ||||| | ||   |  | ||   | ||      ||  |||  | |  |   || | ||  | ||||||   || |||  | ||  ||| ||||||||||||||||| || || || |||||||||||||| ||||||
---------------------------------gtaagtgctac-acta-tataagttctata------atctttcttgcttaaatctcgtgtgcccata-gtgctaatgtatgt-gcagAATGCTTGTCGAGGAGAACTTGAGAGGCAAGAATATCTTGTTTCTAGGCATCCTGAGTTCCGTTACAAGACCGAATTTCAGAGTCATGAACCTGAG

upper sequence: GLYMA07G01440.1 (Glycine max), 3'ss of exon 2
lower sequence: AT1G51690.3 (Arabidopsis thaliana), 3'ss of exon 4
gtaagtctaattttttcttcagcaatttcttttataactaaaattactaacttaggttttaaagattctactttacacccttaattttctaatatctatgtatactgtaacttgcagCATCACGGATCAAGAAGGGACTTGGAGAGGATGGACTATTCTATTAGTAGACATCCTGAGTTCCGTTATAAAACAGAGTTTCAGAGTCATGAGCCTGAG
                  |   || |||   || |||      || || |  | || |||  |      | ||        |  || | |  | |   || || ||||   || |||      ||| | ||||| ||  | ||       || ||| | | |   || ||||| ||||| ||||||||||||||||||||||||||||| ||||||
---------------gtatgtccactttaccttgtaatcgtt-tttctgatatgggatttgga----tcattt--------tggttatatgttgttgttgcatgctgtggattacagAGCAGTGGAACCAGAAGAGAGCTTGAAGAAGCTGATTATCC-ACTG--AGGCATCCAGAGTTTCGTTATAAAACAGAGTTTCAGAGTCATGACCCTGAG

upper sequence: GLYMA07G01440.1 (Glycine max), 3'ss of exon 2
lower sequence: AT1G17720.2 (Arabidopsis thaliana), 3'ss of exon 2
gtaagtctaattttttcttcagcaatttcttttataactaaaattactaacttaggttttaaagattctactttacacccttaattttctaatatctatgtatactgtaacttgcagCATCACGGATCAAGAAGGGACTTGGAGAGGATGGACTATTCTATTAGTAGACATCCTGAGTTCCGTTATAAAACAGAGTTTCAGAGTCATGAGCCTGAG
                     |  | ||| ||| |         | | |  || | ||  ||| |    |  |||    ||  |         |    || | | ||| |||| ||||||   || || || | |||  | |||  || ||| ||  |  ||   || ||||||||||| || ||||||||||| |||||||||||||| || |||
---------------------gtgagttcctttttcttc-----tgcaagatttgtttcgaaaaa----atgttatgtgctgtaac-----gcactcttgcaaaatgttactttcagCATGGAGGGTCCAGGAAGGATCTTGAGCAGACGGATTACCCAGTT---AGGCATCCTGAGTTTCGATATAAAACAGAATTTCAGAGTCATGAACCAGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33389971|gb|CA853178.1|CA853178
EST:     GTGATCGTGGTGGTCAAGTAGTTCTCTTTGAGCGGACAGATACAAAAGAT                         CATCACGGATCAAGAAGGGACTTGGAGAGGATGGACTATTCTATTAGTAGA
genomic: GTGATCGTGGTGGTCGAGTAGTTCTCTTTGAGCGGACAGATACAAAAGATgtaagtctaa ... taacttgcagCATCACGGATCAAGAAGGGACTTGGAGAGGATGGACTATTCTATTAGTAGA
EST: gi|207824963|gb|GD797179.1|GD797179
EST:     GTGATCGTGGTGGTCGAGTAGTTCTCTTTGAGCGGACAGATACAAAAGAT                         CATCACGGATCAAGAAGGGACTTGGAGAGGATGGACTATTCTATTAGTAGA
genomic: GTGATCGTGGTGGTCGAGTAGTTCTCTTTGAGCGGACAGATACAAAAGATgtaagtctaa ... taacttgcagCATCACGGATCAAGAAGGGACTTGGAGAGGATGGACTATTCTATTAGTAGA
EST: gi|208092864|gb|GD886793.1|GD886793
EST:     GTGATCGTGGTGGTCGAGTAGTTCTCTTTGAGCGGACAGATACAAAAGAT                         CATCACGGATCAAGAAGGGACTTGGAGAGGATGGACTATTCTATTAGTAGA
genomic: GTGATCGTGGTGGTCGAGTAGTTCTCTTTGAGCGGACAGATACAAAAGATgtaagtctaa ... taacttgcagCATCACGGATCAAGAAGGGACTTGGAGAGGATGGACTATTCTATTAGTAGA
EST: gi|208259705|gb|GE059735.1|GE059735
EST:     GTGATCGTGGTGGTCGAGTAGTTCTCTTTGAGCGGACAGATACAAAAGAT                         CATCACGGATCAAGAAGGGACTTGGAGAGGATGGACTATTCTATTAGTAGA
genomic: GTGATCGTGGTGGTCGAGTAGTTCTCTTTGAGCGGACAGATACAAAAGATgtaagtctaa ... taacttgcagCATCACGGATCAAGAAGGGACTTGGAGAGGATGGACTATTCTATTAGTAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agattctactttacacccttaattttctaatatctatgtatactgtaacttgcagCATCACGGATCAAGAAGGGACTTGGAGAGGATGGACTATTCTATTAGTAGACATCCTGAGTTCCGTTATAAAACAGAGTTTCAGAGTCATGAGCCTGAG
                  ttaattttctaatatc  TA-rich tract