Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgattctctgattgaaagatcataaataatttttttcactcaaatttttgcatttattgacattaaaatcttaaaataatttcattattctgtaaacttctattgaatagGCCCTTCAGTCTTCAGATGGAAACCTCCTTTCTCTTCACCAAAAAGTAGGGATGTTCATGCCCCTGCACCTGCACCATCACCAGCAATTCTGCCAGGTCA

Basic information

species Glycine max
transcript GLYMA07G01210.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213590493|gb|DB972286.1|DB972286
EST:     AACTCCAGCGCCAACCTACCCAGTCCAGGCTCCTTCATACAGTCATCAAG                         GCCCTTCAGTCTTCAGATGGAAACCTCCTTTCTCTTTCAC-AAAA-GTAGG
genomic: AACTCCAGCGCCAACCTACCCAGTCCAGGCTCCTTCATACAGTCATCAAGgtttgattct ... tattgaatagGCCCTTCAGTCTTCAGATGGAAACCTCCTTTCTCTT-CACCAAAAAGTAGG
EST: gi|208040693|gb|GD839798.1|GD839798
EST:     AACTCCAGCGCCAACCTACCCAGTCCAGGCTCCTTCATGCAGTCATCAAG                         GCCCTTCAGTCTTCAGATGGAAACCTCCTTTCTCTTCACCAAAAAGTAGGG
genomic: AACTCCAGCGCCAACCTACCCAGTCCAGGCTCCTTCATACAGTCATCAAGgtttgattct ... tattgaatagGCCCTTCAGTCTTCAGATGGAAACCTCCTTTCTCTTCACCAAAAAGTAGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgacattaaaatcttaaaataatttcattattctgtaaacttctattgaatagGCCCTTCAGTCTTCAGATGGAAACCTCCTTTCTCTTCACCAAAAAGTAGGGATGTTCATGCCCCTGCACCTGCACCATCACCAGCAATTCTGCCAGGTCA
 tattgac  putative branch site (score: 2)
                                         cttctatt  putative PPT
      attaaaatcttaaaat  TA-rich tract