Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcatttccataccttctctaatgtttctgcaaactgcatccttctgcgaaactcattcgttctctgcaattttagTTTATGAGGAAACTGCTGGTTTGATGGTTAATGATCCGGTCTTACGGACGCACAAG

Basic information

species Glycine max
transcript GLYMA07G00430.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G00430.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os06g45120.2 (Oryza sativa), 3'ss of exon 2
-------------------------gtgcatttcca-taccttctcta-atgtttc-tgcaaactgcatccttctgcgaaactcattcgttctctgcaattttagTTTATGAGGAAACTGCTGGTTTGATGGTTAATGATCCGGTCTTACGGACGCACAAG
                             ||||    | |||| ||   |  |  | || | | |  |   |||  | |   |   | ||  |   |  ||  ||||||||||||||| ||||| |||||||| |||||||| || ||  | ||    |||
gtataggacggtgaaattctacctcacatatttgtggtgccttttccccacatgacatgtacaatataaatttcaccaattttttcttgtgattaccgtttgcagTTTATGAGGAAACAGCTGGGTTGATGGTCAATGATCCAGTGTTGAGAACAAGAAAG

upper sequence: GLYMA07G00430.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os02g07870.1 (Oryza sativa), 3'ss of exon 2
--------------------------------------------gtgcatttccataccttctctaatgtttctgcaaactgcatccttctgcgaaactcat-----tcgttctctgca-attttagTTTATGAGGAAACTGCTGGTTTGATGGTTAATGATCCGGTCTTACGGACGCACAAG
                                              |  ||   ||| |   | || ||  | |  ||||   |  |     | ||  |||      | ||| | ||   ||   |||||||||||||||||||||  |||||||||| || || || ||  | || |  |||
gtgtggaacagctctttagtttctatctttaacagcatacagacacgagttctgatagcaattata-tgcctgttgaaaccatagtcaatatctaacatcagaaatgttgttatttgtgtatcacagTTTATGAGGAAACTGCTGGACTGATGGTTAACGACCCTGTTTTGAGAACACGAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120532286|gb|EH260419.1|EH260419
EST:     TCTCATTGGTGAAATTATTCGTCTCGAAGGGGATTCTGCTACCATCCAAG                         TTTATGAGGAAACTGCTGGTTTGATGGTTAATGATCCGGTCTTACGGACGC
genomic: TCTCATTGGTGAAATTATTCGTCTCGAAGGGGATTCTGCTACCATCCAAGgtgcatttcc ... gcaattttagTTTATGAGGAAACTGCTGGTTTGATGGTTAATGATCCGGTCTTACGGACGC
EST: gi|209713481|gb|BW679271.1|BW679271
EST:     TCTCATTGGTGAAATTATTCGTCTCGAAGGGGATTCTGCTACCATCCAAG                         TTTATGAGGAAACTGCTGGTTTGATGGTTAATGATCCGGTCTTACGGACGC
genomic: TCTCATTGGTGAAATTATTCGTCTCGAAGGGGATTCTGCTACCATCCAAGgtgcatttcc ... gcaattttagTTTATGAGGAAACTGCTGGTTTGATGGTTAATGATCCGGTCTTACGGACGC
EST: gi|5676817|gb|AI937947.1|AI937947
EST:     TCTCATTGGTGAAATTATTCGTCTCGAAGGGGATTCTGCTACCATCCAAG                         TTTATGAGGAAACTGCTGGTTTGATGGTTAATGATCCGGTCTTACGGACGC
genomic: TCTCATTGGTGAAATTATTCGTCTCGAAGGGGATTCTGCTACCATCCAAGgtgcatttcc ... gcaattttagTTTATGAGGAAACTGCTGGTTTGATGGTTAATGATCCGGTCTTACGGACGC
EST: gi|213601517|gb|DB970433.1|DB970433
EST:     TCTCATTGGTGAAATTATTCGTCTCGAAGGGGATTCTGCTACCATCCAAG                         TTTATGAGGAAACTGCTGGTTTGATGGTTAATGATCCGGTCTTACGGACGC
genomic: TCTCATTGGTGAAATTATTCGTCTCGAAGGGGATTCTGCTACCATCCAAGgtgcatttcc ... gcaattttagTTTATGAGGAAACTGCTGGTTTGATGGTTAATGATCCGGTCTTACGGACGC
EST: gi|24136428|gb|BU926938.1|BU926938
EST:     TCTCATTGGTGAAATTATTCGTCTCGAAGGGGATTCTGCTACCATCCAAG                         TTTATGAGGAAACTGCTGGTTTGATGGTTAATGATCCGGTCTTACGGACGC
genomic: TCTCATTGGTGAAATTATTCGTCTCGAAGGGGATTCTGCTACCATCCAAGgtgcatttcc ... gcaattttagTTTATGAGGAAACTGCTGGTTTGATGGTTAATGATCCGGTCTTACGGACGC
EST: gi|213603713|gb|DB966827.1|DB966827
EST:     TCTCATTGGTGAAATTATTCGTCTCGAAGGGGATTCTGCTACCATCCAAG                         TTTATGAGGAAACTGCTGGTTTGATGGTTAATGATCCGGTCTTACGGACGC
genomic: TCTCATTGGTGAAATTATTCGTCTCGAAGGGGATTCTGCTACCATCCAAGgtgcatttcc ... gcaattttagTTTATGAGGAAACTGCTGGTTTGATGGTTAATGATCCGGTCTTACGGACGC
EST: gi|4303226|gb|AI443446.1|AI443446
EST:     TCTCATTGGTGAAATTATTCGTCTCGAAGGGGATTCTGCTACCATCCAAG                         TTTATGAGGAAACTGCTGGTTTGATGGTTAATGATCCGGTCTTACGGACGC
genomic: TCTCATTGGTGAAATTATTCGTCTCGAAGGGGATTCTGCTACCATCCAAGgtgcatttcc ... gcaattttagTTTATGAGGAAACTGCTGGTTTGATGGTTAATGATCCGGTCTTACGGACGC
EST: gi|209722553|gb|BW682651.1|BW682651
EST:     TCTCATTGGTGAAATTATTCGTCTCGAAGGGGATTCTGCTACCATCCAAG                         TTTATGAGGAAACTGCTGGTTTGATGGTTAATGATCCGGTCTTACGGACGC
genomic: TCTCATTGGTGAAATTATTCGTCTCGAAGGGGATTCTGCTACCATCCAAGgtgcatttcc ... gcaattttagTTTATGAGGAAACTGCTGGTTTGATGGTTAATGATCCGGTCTTACGGACGC
EST: gi|213616520|gb|DB965718.1|DB965718
EST:     TCTCATTGGTGAAATTATTCGTCTCGAAGGGGATTCTGCTACCATCCAAG                         TTTATGAGGAAACTGCTGGTTTGATGGTTAATGATCCGGTCTTACGGACGC
genomic: TCTCATTGGTGAAATTATTCGTCTCGAAGGGGATTCTGCTACCATCCAAGgtgcatttcc ... gcaattttagTTTATGAGGAAACTGCTGGTTTGATGGTTAATGATCCGGTCTTACGGACGC
EST: gi|120530321|gb|EH258454.1|EH258454
EST:     TCTCATTGGTGAAATTATTCGTCTCGAAGGGGATTCTGCTACCATCCAAG                         TTTATGAGGAAACTGCTGGTTTGATGGTTAATGATCCGGTCTTACGGACGC
genomic: TCTCATTGGTGAAATTATTCGTCTCGAAGGGGATTCTGCTACCATCCAAGgtgcatttcc ... gcaattttagTTTATGAGGAAACTGCTGGTTTGATGGTTAATGATCCGGTCTTACGGACGC
EST: gi|4286413|gb|AI441043.1|AI441043
EST:     TCTCATTGGTGAAATTATTCGTCTCGAAGGGGATTCTGCTACCATCCAAG                         TTTATGAGGAAACTGCTGGTTTGATGGTTAATGATCCGGTCTTACGGACGC
genomic: TCTCATTGGTGAAATTATTCGTCTCGAAGGGGATTCTGCTACCATCCAAGgtgcatttcc ... gcaattttagTTTATGAGGAAACTGCTGGTTTGATGGTTAATGATCCGGTCTTACGGACGC
EST: gi|192305155|gb|FG993935.1|FG993935
EST:     TCTCATTGGTGAAATTATTCGTCTCGAAGGGGATTCTGCTACCATCCAAG                         TTTATGAGGAAACTGCTGGTTTGATGGTTAATGATCCGGTCTTACGGACGC
genomic: TCTCATTGGTGAAATTATTCGTCTCGAAGGGGATTCTGCTACCATCCAAGgtgcatttcc ... gcaattttagTTTATGAGGAAACTGCTGGTTTGATGGTTAATGATCCGGTCTTACGGACGC
EST: gi|120532224|gb|EH260357.1|EH260357
EST:     TCTCATTGGTGAAATTATTCGTCTCGAAGGGGATTCTGCTACCATCCAAG                         TTTATGAGGAAACTGCTGGTTTGATGGTTAATGATCCGGTCTTACGGACGC
genomic: TCTCATTGGTGAAATTATTCGTCTCGAAGGGGATTCTGCTACCATCCAAGgtgcatttcc ... gcaattttagTTTATGAGGAAACTGCTGGTTTGATGGTTAATGATCCGGTCTTACGGACGC
EST: gi|209728747|gb|BW655427.1|BW655427
EST:     TCTCATTGGTGAAATTATTCGTCTCGAAGGGGATTCTGCTACCATCCAAG                         TTTATGAGGAAACTGCTGGTTTGATGGTTAATGATCCGGTCTTACGGACGC
genomic: TCTCATTGGTGAAATTATTCGTCTCGAAGGGGATTCTGCTACCATCCAAGgtgcatttcc ... gcaattttagTTTATGAGGAAACTGCTGGTTTGATGGTTAATGATCCGGTCTTACGGACGC
EST: gi|213618474|gb|DB967711.1|DB967711
EST:     TCTCATTGGTGAAATTATTCGTCTCGAAGGGGATTCTGCTACCATCCAAG                         TTTATGAGGAAACTGCTGGTTTGATGGTTAATGATCCGGTCTTACGGACGC
genomic: TCTCATTGGTGAAATTATTCGTCTCGAAGGGGATTCTGCTACCATCCAAGgtgcatttcc ... gcaattttagTTTATGAGGAAACTGCTGGTTTGATGGTTAATGATCCGGTCTTACGGACGC
EST: gi|193531347|gb|FK487994.1|FK487994
EST:     TCTCATTGGTGAAATTATTCGTCTCGAAGGGGATTCTGCTACCATCCAAG                         TTTATGAGGAAACTGCTGGTTTGGTGGTTAATGATCCGGTCTTACGGACGC
genomic: TCTCATTGGTGAAATTATTCGTCTCGAAGGGGATTCTGCTACCATCCAAGgtgcatttcc ... gcaattttagTTTATGAGGAAACTGCTGGTTTGATGGTTAATGATCCGGTCTTACGGACGC
EST: gi|213616575|gb|DB965745.1|DB965745
EST:     TCTCATTGGTGAAATTATTCGTCTCGAAGGGGATTCTGCTACCATCCAAG                         TTTATGAGGAAACTGCTGGTTTGATGGTTAATGATCCGGTCTTACGGACGC
genomic: TCTCATTGGTGAAATTATTCGTCTCGAAGGGGATTCTGCTACCATCCAAGgtgcatttcc ... gcaattttagTTTATGAGGAAACTGCTGGTTTGATGGTTAATGATCCGGTCTTACGGACGC
EST: gi|213607085|gb|DB957061.1|DB957061
EST:     TCTCATTGGTGAAATTATTCGTCTCGAAGGGGATTCTGCTACCATCCAAG                         TTTATGAGGAAACTGCTGGTTTGATGGTTAATGATCCGGTCTTACGGACGC
genomic: TCTCATTGGTGAAATTATTCGTCTCGAAGGGGATTCTGCTACCATCCAAGgtgcatttcc ... gcaattttagTTTATGAGGAAACTGCTGGTTTGATGGTTAATGATCCGGTCTTACGGACGC
EST: gi|209712496|gb|BW684108.1|BW684108
EST:     TCTCATTGGTGAAATTATTCGTCTCGAAGGGGATTCTGCTACCATCCAAG                         TTTATGAGGAAACTGCTGGTTTGATGGTTAATGATCCGGTCTTACGGACGC
genomic: TCTCATTGGTGAAATTATTCGTCTCGAAGGGGATTCTGCTACCATCCAAGgtgcatttcc ... gcaattttagTTTATGAGGAAACTGCTGGTTTGATGGTTAATGATCCGGTCTTACGGACGC
EST: gi|213594913|gb|DB971786.1|DB971786
EST:     TCTCATTGGTGAAATTATTCGTCTCGAAGGGGATTCTGCTACCATCCAAG                         TTTATGAGGAAACTGCTGGTTTGATGGTTAATGATCCGGTCTTACGGACGC
genomic: TCTCATTGGTGAAATTATTCGTCTCGAAGGGGATTCTGCTACCATCCAAGgtgcatttcc ... gcaattttagTTTATGAGGAAACTGCTGGTTTGATGGTTAATGATCCGGTCTTACGGACGC
EST: gi|213604715|gb|DB960480.1|DB960480
EST:     TCTCATTGGTGAAATTATTCGTCTCGAAGGGGATTCTGCTACCATCCAAG                         TTTATGAGGAAACTGCTGGTTTGATGGTTAATGATCCGGTCTTACGGACGC
genomic: TCTCATTGGTGAAATTATTCGTCTCGAAGGGGATTCTGCTACCATCCAAGgtgcatttcc ... gcaattttagTTTATGAGGAAACTGCTGGTTTGATGGTTAATGATCCGGTCTTACGGACGC
EST: gi|209700893|gb|BW683110.1|BW683110
EST:     TCTCATTGGTGAAATTATTCGTCTCGAAGGGGATTCTGCTACCATCCAAG                         TTTATGAGGAAACTGCTGGTTTGATGGTTAATGATCCGGTCTTACGGACGC
genomic: TCTCATTGGTGAAATTATTCGTCTCGAAGGGGATTCTGCTACCATCCAAGgtgcatttcc ... gcaattttagTTTATGAGGAAACTGCTGGTTTGATGGTTAATGATCCGGTCTTACGGACGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtttctgcaaactgcatccttctgcgaaactcattcgttctctgcaattttagTTTATGAGGAAACTGCTGGTTTGATGGTTAATGATCCGGTCTTACGGACGCACAAG
 ctctaat  putative branch site (score: 3)
                                       ttctctgc  putative PPT
                                               aatttta  TA-rich tract