1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtcagttctttccttcctttcaatacggatcaagtcgccaccgcaaccacttcgccatatcaacaaacgcctcttccttcttactcctctcctccttcttctcttctttgtatatcttatgcttgccttcttccgtttttctgcagATATTTCGTATTTTACTTGGTATCAATGTTCGTGTCCTCTTCATTCTTTTGCTCCTCGGCTTGGGAGCTATCTTTTACGTCGGAGCTTCTACTTCTCCTA
species | Glycine max |
transcript | GLYMA07G00350.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACAAGCCTAGAACCTTCCCCAACATGCGCACTAAACCTTACACCCCTCTG ATATTTCGTATTTTACTTGGTATCAATGTTCGTGTCCTCTTEST: gi|213597643|gb|DB962153.1|DB962153
genomic: ACAAGCCTAGAACCTTCCCCAACATGCGCACTAAACCTTACACCCCTCTGgtcagttctt ... ttttctgcagATATTTCGTATTTTACTTGGTATCAATGTTCGTGTCCTCTT
EST: ACAAGCCTAGAACCTTCCCCAACATGCGCACTAAACCTTACACCCCTCTG ATATTTCGTATTTTACTTGGTATCAATGTTCGTGTCCTCTTCATTCTTTTGEST: gi|193712070|gb|FK648813.1|FK648813
genomic: ACAAGCCTAGAACCTTCCCCAACATGCGCACTAAACCTTACACCCCTCTGgtcagttctt ... ttttctgcagATATTTCGTATTTTACTTGGTATCAATGTTCGTGTCCTCTTCATTCTTTTG
EST: ACAAGCCTAGAACCTTCCCCAACATGCGCACTAAACCTTACACCCCTCTG ATATTTCGTATTTTAC
genomic: ACAAGCCTAGAACCTTCCCCAACATGCGCACTAAACCTTACACCCCTCTGgtcagttctt ... ttttctgcagATATTTCGTATTTTAC
ctccttcttctcttctttgtatatcttatgcttgccttcttccgtttttctgcagATATTTCGTATTTTACTTGGTATCAATGTTCGTGTCCTCTTCATTCTTTTGCTCCTCGGCTTGGGAGCTATCTTTTACGTCGGAGCTTCTACTTCTCCTA
tcttatgcttgccttc CT-rich tract
tttgtatatcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagttctttccttcctttcaatacggatcaagtcgccaccgcaaccacttcgccatatcaacaaacgcctcttccttcttactcctctcctccttcttctcttctttgtatatcttatgcttgccttcttccgtttttctgcagATATTTCGTATTTTACTTGGTATCAATGTTCGTGTCCTCTTCATTCTTTTGCTCCTCGGCTTGGGAGCTATCTTTTACGTCGGAGCTTCTACTTCTCCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT