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...gaaatatctcagatattttgaacatcatatatataaaattcaagttcattatgcatatgcaataacaaacattaatttttacttgttgaaaatattgcagGTTTTTTGTATGTATATTACAGGAAATCTTGAATCAGTATTTCCAGAAGAACATCGCAAAGAAATTCTTCGTTACACATATTATCACCAG
species | Glycine max |
transcript | GLYMA07G00330.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCCATTGGCCTGCTCAAATTGCAGGTCCTCTCTTCTTTCTTCCTCCTTTG GTTTTTTGTATGTATATTACAGGAAATCTTGAATCAGTATTTCCAGAAGAAEST: gi|209727472|gb|BW663733.1|BW663733
genomic: GCCATTGGCCTGCTCAAATTGCAGGTCCTCTCTTCTTTCTTCCTCCTTTGgtaagtactc ... aatattgcagGTTTTTTGTATGTATATTACAGGAAATCTTGAATCAGTATTTCCAGAAGAA
EST: GCCATTGGCCTGCTCAAATTGCAGGTCCTCTCTTCTTTCTTCCTCCTTTG GNNNNNNNGTATGTATATTACAGGAAATCTTGAATCAGTATTTCCAGAAGAEST: gi|33390028|gb|CA853235.1|CA853235
genomic: GCCATTGGCCTGCTCAAATTGCAGGTCCTCTCTTCTTTCTTCCTCCTTTGgtaagtactc ... aatattgcagGTTTTTT-GTATGTATATTACAGGAAATCTTGAATCAGTATTTCCAGAAGA
EST: GCCATTGGCCTGCTCAAATTGCAGGTCCTCTCTTCTTTCTTCCTCCTTTG GTTTTTTGTATGTATATTACAGGAAATCTTGAATCAGTATTTCCAGAAGAAEST: gi|33388879|gb|CA852086.1|CA852086
genomic: GCCATTGGCCTGCTCAAATTGCAGGTCCTCTCTTCTTTCTTCCTCCTTTGgtaagtactc ... aatattgcagGTTTTTTGTATGTATATTACAGGAAATCTTGAATCAGTATTTCCAGAAGAA
EST: GCCATTGGCCTGCTCAAATTGCAGGTCCTCTCTTCTTTCTTCCTCCTTTG GTTTTTTGTATGTATATTACAGGAAATCTTGAATCAGTATTTCCAGAAGAAEST: gi|209707634|gb|BW683427.1|BW683427
genomic: GCCATTGGCCTGCTCAAATTGCAGGTCCTCTCTTCTTTCTTCCTCCTTTGgtaagtactc ... aatattgcagGTTTTTTGTATGTATATTACAGGAAATCTTGAATCAGTATTTCCAGAAGAA
EST: GCCATTGGCCTGCTCAAATTGCAGGTCCTCTCTTCTTTCTTCCTCCTTTG GTTTTTTGTATGTATATTACAGGAAATCTTGAATCAGTATTTCCAGAAGAAEST: gi|209724227|gb|BW666592.1|BW666592
genomic: GCCATTGGCCTGCTCAAATTGCAGGTCCTCTCTTCTTTCTTCCTCCTTTGgtaagtactc ... aatattgcagGTTTTTTGTATGTATATTACAGGAAATCTTGAATCAGTATTTCCAGAAGAA
EST: GCCATTGGCCTGCTCAAATTGCAGGTCCTCTCTTCTTTCTTCCTCCTTTG GTTTTTTGTATGTATATTACAGGAAATCTTGAATCAGTATTTCCAGAAGAA
genomic: GCCATTGGCCTGCTCAAATTGCAGGTCCTCTCTTCTTTCTTCCTCCTTTGgtaagtactc ... aatattgcagGTTTTTTGTATGTATATTACAGGAAATCTTGAATCAGTATTTCCAGAAGAA
tcattatgcatatgcaataacaaacattaatttttacttgttgaaaatattgcagGTTTTTTGTATGTATATTACAGGAAATCTTGAATCAGTATTTCCAGAAGAACATCGCAAAGAAATTCTTCGTTACACATATTATCACCAG
aataacaaacattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaatatctcagatattttgaacatcatatatataaaattcaagttcattatgcatatgcaataacaaacattaatttttacttgttgaaaatattgcagGTTTTTTGTATGTATATTACAGGAAATCTTGAATCAGTATTTCCAGAAGAACATCGCAAAGAAATTCTTCGTTACACATATTATCACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - -tgcatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaacat