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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttcttctggtcctgtacttatgtttcttatccagtttccattatttggaaggatctaaatcttgtttgtgattttaaacactagagatttctgattctggaaataataacatggaaccttcaaacttattccttaatttaaatactatatttgtgttgataatgccttggacttatctttcagGAGGATTACATGAACTTGGATACACTGGAGAGTCGTTTATCTAATTTCCTCCGACGAGCATCTATGAATAATCACAACCAACAATATCCGCAGCGTGTTA

Basic information

species Glycine max
transcript GLYMA07G00230.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14125509|gb|BG789947.1|BG789947
EST:     ATCTTGCAAACCGCTTGGAGGAGGGCATGTTAAAAGCTGCTCTCTCTAAG                         GAGGATTACATGAACTTGGATACACTGGAGAGTCGTTTATCTAATTTCCTC
genomic: ATCTTGCAAACCGCTTGGAGGAGGGCATGTTAAAAGCTGCTCTCTCTAAGgtttcttctg ... tatctttcagGAGGATTACATGAACTTGGATACACTGGAGAGTCGTTTATCTAATTTCCTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttccttaatttaaatactatatttgtgttgataatgccttggacttatctttcagGAGGATTACATGAACTTGGATACACTGGAGAGTCGTTTATCTAATTTCCTCCGACGAGCATCTATGAATAATCACAACCAACAATATCCGCAGCGTGTTA
                         tgttgat  putative branch site (score: 4)
                                           cttatctttc  putative PPT
     taatttaaatactata  TA-rich tract