1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatgtattgtgtactgtgtttatttcttgaatctttgatgcattgaatactctatttttagctcatttctcatattctacctgtctgaaattagAGCATGCATATTGCGCTTCAAGGACTGCCCGTTATGTGGGGCTGATATTGTGAAGATCGAGCCTGATGCTAATCTTCAAGGTGTAGTTGATCACTTTATT
species | Glycine max |
transcript | GLYMA06G47010.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTTTTATTTGACACCAGCAAATGTGTGCCTTGTTCTCATGTTTTCTGCAA AGCATGCATATTGCGCTTCAAGGACTGCCCGTTATGTGGGGCTGATATTGTEST: gi|192323561|gb|FK015327.1|FK015327
genomic: CTTTTATTTGACACCAGCAAATGTGTGCCTTGTTCTCATGTTTTCTGCAAgtatgtattg ... ctgaaattagAGCATGCATATTGCGCTTCAAGGACTGCCCGTTATGTGGGGCTGATATTGT
EST: CTTTTATTTGACACCAGCAAATGTGTGCCTTGTTCTCATGTTTTCTGCAA AGCATGCATATTGCGCTTCAAGGACTGCCCGTTATGTGGGGCTGATATTGT
genomic: CTTTTATTTGACACCAGCAAATGTGTGCCTTGTTCTCATGTTTTCTGCAAgtatgtattg ... ctgaaattagAGCATGCATATTGCGCTTCAAGGACTGCCCGTTATGTGGGGCTGATATTGT
gcattgaatactctatttttagctcatttctcatattctacctgtctgaaattagAGCATGCATATTGCGCTTCAAGGACTGCCCGTTATGTGGGGCTGATATTGTGAAGATCGAGCCTGATGCTAATCTTCAAGGTGTAGTTGATCACTTTATT
cctgtct CT-rich tract
aatactctattttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtattgtgtactgtgtttatttcttgaatctttgatgcattgaatactctatttttagctcatttctcatattctacctgtctgaaattagAGCATGCATATTGCGCTTCAAGGACTGCCCGTTATGTGGGGCTGATATTGTGAAGATCGAGCCTGATGCTAATCTTCAAGGTGTAGTTGATCACTTTATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA