1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gtgaagaaaaaactctatgaactaaacatcattagtgatgtaaaaacttgcatttgttatgctcctttgttttctaatctgtgcaaacatttcatgccagAGAGGAGGCAGGCTGAAGCATCTCGGATAAGGGAGAAGTATCCCGAAAGAATTCCA
species | Glycine max |
transcript | GLYMA06G46270.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAATTATTGTCATGGCTAAGAGCTCATTCAAGATGGAACACCCACTTG AGAGGAGGCAGGCTGAAGCATCTCGGATAAGGGAGAAGTATCCCGAAAGAA
genomic: GAATTATTGTCATGGCTAAGAGCTCATTCAAGATGGAACACCCACTTGgttcgttttt ... ttcatgccagAGAGGAGGCAGGCTGAAGCATCTCGGATAAGGGAGAAGTATCCCGAAAGAA
acttgcatttgttatgctcctttgttttctaatctgtgcaaacatttcatgccagAGAGGAGGCAGGCTGAAGCATCTCGGATAAGGGAGAAGTATCCCGAAAGAATTCCA
ttctaat putative branch site (score: 2)
atttgttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaagaaaaaactctatgaactaaacatcattagtgatgtaaaaacttgcatttgttatgctcctttgttttctaatctgtgcaaacatttcatgccagAGAGGAGGCAGGCTGAAGCATCTCGGATAAGGGAGAAGTATCCCGAAAGAATTCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- -aagaaaa
- - - - - - - -tatgaac
- - - - - - - - - - - - - - - - - -tgatgta
- - - - - - - - - - - - - - - - - - - - - - - - tgcattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atctgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaacat