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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcaccgacaatcttgtagtggctgaaccttttttatgtttataatatgaaattccttattttttttttattttttttaactatgtctcctggtgtacggtgcaccctttagTTGCAAGAGATGGAAATGAAGCGCGATAAAGACATTTATGGTGAAGTTTTCAAGAGTCATAATTCCATACA

Basic information

species Glycine max
transcript GLYMA06G46230.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10843671|gb|BF066945.1|BF066945
EST:     CAGAAGCTGAAAAATTGAGTTTAGTTTCTGAAGGTTGCAATTCGAGAATT                         TTGCAAGAGATGGAAATGAAGCGCGATAAAGACATTTATGGTGAAGTTTTC
genomic: CAGAAGCTGAAAAATTGAGTTTAGTTTCTGAAGGTTGCAATTCGAGAATTgtaagcaccg ... caccctttagTTGCAAGAGATGGAAATGAAGCGCGATAAAGACATTTATGGTGAAGTTTTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattttttttttattttttttaactatgtctcctggtgtacggtgcaccctttagTTGCAAGAGATGGAAATGAAGCGCGATAAAGACATTTATGGTGAAGTTTTCAAGAGTCATAATTCCATACA
                 ttttaac  putative branch site (score: 2)
                                             cacccttt  putative PPT
     tttttttatttttttt  TA-rich tract