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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattttgtgcagtttttaactccttgtctctgactgcattatgccaggaatttgatgtttgataaatttgttaatgcatttgtctttgtatgatgatatcaagcagATTTCTACCCGGGAGAAAGATTATTTGGTTGACACAATTGCCCTGCATGATTTTATGGGCATTCTTCGCCCCATTTTTGCCAATCCTTCAATTTGTAAA

Basic information

species Glycine max
transcript GLYMA06G46220.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G46220.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os07g32890.1 (Oryza sativa), 3'ss of exon 2
gtaattttgtgcagtttttaactccttgtctctgactgcattatgccaggaatttgatgtttgataaatttgttaatgcatttgtctttgtatgatgatatcaagcagATTTCTACCCGGGAGAAAGATTATTTGGTTGACACAATTGCCCTGCATGATTTTATGGGCATTCTTCGCCCCATTTTTGCCAATCCTTCAATTTGTAAA
                  |||||  | ||   |  || | |  |||      | || || || ||     ||||||     |    | |  || || || |     |||| ||||||| | ||  |||||||||  | |||||||| || ||||||||  | ||| ||||||| || ||  ||||||||||||||||||| ||||| 
-----------------gtaactggtggtggataccttcttattgc------tctgttgctt-attggcctgttaagattatgacatataaat-atcatttt---tagATCTCTACCCAGAAGGCAGATTATTTAATAGACACAATAGCGCTGCATGACGTGATGAGCATTCTACGACCAGTTTTTGCCAATCCTTCAATCTGTAAG

upper sequence: GLYMA06G46220.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv12s0059g00620.t01 (Vitis vinifera), 3'ss of exon 2
gtaattttgtgcagtttttaactccttgtctc-tgactgcattatgccaggaatttgatgtttgataaatttgttaatgcatttgtctttgtatgatgatatcaagcagATTTCTACCCGGGAGAAAGATTATTTGGTTGACACAATTGCCCTGCATGATTTTATGGGCATTCTTCGCCCCATTTTTGCCAATCCTTCAATTTGTAAA
||||| |     || |  |   || || ||   ||  ||||||         |||  ||   ||||  |||  ||      ||||| ||||| |   ||| |  ||||||||||||| | | |  ||||||||||||| ||||||||||| |||||||||    |||   ||||||  ||| | ||||| ||||||   ||||| || 
gtaatgtatataagctaatcgttctttatccagtgcgtgcattt------atattgcattactgatgtattcatt------tttgtttttgttttgagat-ttgagcagATTTCTACTCAGAATGAAGATTATTTGGTAGACACAATTGCTCTGCATGATACATTGGATGTTCTTCAACCCGTCTTTGCTAATCCTAGTATTTGCAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgatgtttgataaatttgttaatgcatttgtctttgtatgatgatatcaagcagATTTCTACCCGGGAGAAAGATTATTTGGTTGACACAATTGCCCTGCATGATTTTATGGGCATTCTTCGCCCCATTTTTGCCAATCCTTCAATTTGTAAA
                 tgttaat  putative branch site (score: 3)
      tttgataaatttgtta  TA-rich tract