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gtaatatgctttataattgtatttaatttaatttataggagcaagcaggaggcaaggatagtggtgataccttctatgttatctttgtttcttcccttctggcagGTTGTACTAAACCAGATTGTGTTAGGTCCATGTGTCATTGCTGTTGTTTTTGCATGGAATAATTTATGGCTACAGAAGCTCTCTGAGCTTCCAGAAAAAT
species | Glycine max |
transcript | GLYMA06G44390.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCCTTGACCACTGTCTCCCCAAACCAACAGTCCAGAACCTAGTGTTAAAG GTTGTACTAAACCAGATTGTGTTAEST: gi|20207621|gb|BQ133710.1|BQ133710
genomic: GCCTTGACCACTGTCTCCCCAAACCAACAGTCCAGAACCTAGTGTTAAAGgtaatatgct ... cttctggcagGTTGTACTAAACCAGATTGTGTTA
EST: GCCTTGACCACTGTCTCCCCAAACCAACAGTCCAGAACCTAGTGTTAAAG GTTGTACTAAACCAGATTGTGTTAGGTCCATGTGTCATTGCTGTTGTTTTTEST: gi|23726588|gb|BU761291.1|BU761291
genomic: GCCTTGACCACTGTCTCCCCAAACCAACAGTCCAGAACCTAGTGTTAAAGgtaatatgct ... cttctggcagGTTGTACTAAACCAGATTGTGTTAGGTCCATGTGTCATTGCTGTTGTTTTT
EST: GCCTTGACCACTGTCTCCCCAAACCAACAGTCCAGAACCTAGTGTTAAAG GTTGTACTAAACCAGATTGTGTTAGGTCCATGTGTCATTGCTGTTGTTTTTEST: gi|17023338|gb|BM094372.1|BM094372
genomic: GCCTTGACCACTGTCTCCCCAAACCAACAGTCCAGAACCTAGTGTTAAAGgtaatatgct ... cttctggcagGTTGTACTAAACCAGATTGTGTTAGGTCCATGTGTCATTGCTGTTGTTTTT
EST: GCCTTGACCACTGTCTCCCCAAACCAACAGTCCAGAACCTAGTGTTAAAG GTTGTACTAAACCAGATTGTGTTAGGTCCATGTGTCATTGCTGTTGTTTTT
genomic: GCCTTGACCACTGTCTCCCCAAACCAACAGTCCAGAACCTAGTGTTAAAGgtaatatgct ... cttctggcagGTTGTACTAAACCAGATTGTGTTAGGTCCATGTGTCATTGCTGTTGTTTTT
ggcaaggatagtggtgataccttctatgttatctttgtttcttcccttctggcagGTTGTACTAAACCAGATTGTGTTAGGTCCATGTGTCATTGCTGTTGTTTTTGCATGGAATAATTTATGGCTACAGAAGCTCTCTGAGCTTCCAGAAAAAT
ccttctatgttatctt CT-rich tract
tatgttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatatgctttataattgtatttaatttaatttataggagcaagcaggaggcaaggatagtggtgataccttctatgttatctttgtttcttcccttctggcagGTTGTACTAAACCAGATTGTGTTAGGTCCATGTGTCATTGCTGTTGTTTTTGCATGGAATAATTTATGGCTACAGAAGCTCTCTGAGCTTCCAGAAAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT