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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacctagttttatgctcgaactgaacacattttgatttgaatgggaatttttggctatttattctagttttgaatgcatgtttgaaattggaatttgtggttgtgtgttgcagGCAAGAAATTCGAACTTCCACGAGCTCTATGACTTCGGTTCCTAAGCCATTGAAGTTCCTTCGTCCGCATTATGGCACTCTTAAGACCTATTATGAAACT

Basic information

species Glycine max
transcript GLYMA06G44340.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G44340.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G155384_T01 (Zea mays), 3'ss of exon 2
--gtaaacctagttttatgctcgaactgaacacattttgatttgaatgggaatttttggctatttattctagttttgaatgcatgtttgaaattggaatttgtggttgtgtgttgcagGCAAGAAATTCGAACTTCCACGAGCTCTATGACTTCGGTTCCTAAGCCATTGAAGTTCCTTCGTCCGCATTATGGCACTCTTAAGACCTATTATGAAACT
  | ||   |||||   ||||| | |||  | |      | ||   ||  |        |   || ||||           | | | ||  |    ||    |       | || |||||| || |||||  || |||||||||| |||||||||||||| |||||| |||| ||||| || || || | ||| ||||| ||| ||||||  ||||| 
gagaaaggatagttgagtgctccagctgctctcgc----agttctgtgcaa----ccaacggcttgttcttaacccc----cttctctgccaccaaaaccgatc------tatttcagGCAGGAGATTCGCTCTGCCACGAGCTCGATGACTTCGGTTCCAAAGCCACTGAAATTCCTCCGCCCACACTTTGGAACTCTCAAGTCCTATTTCGAAACA

upper sequence: GLYMA06G44340.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv12s0028g03130.t01 (Vitis vinifera), 3'ss of exon 2
gtaaacctagttttatgctcgaactgaacacattttgatttgaatgggaatttttggctatttattctagttttgaatgcatgtttgaaattggaatttgtggttgtgtgttgcagGCAAGAAATTCGAACTTCCACGAGCTCTATGACTTCGGTTCCTAAGCCATTGAAGTTCCTTCGTCCGCATTATGGCACTCTTAAGACCTATTATGAAACT
       || |||   |   ||| |  |    || |  |  | |       | |    ||| | ||  ||||| |   |  |||    || |    ||| |         || ||||||||||||| ||||| | || |||||||||||||| ||||| |||||||| ||||| ||||| || ||||||||  |||| ||  | | ||||||||| 
-------taatttagagt--gaatttgat---ttctagtcagcaatatgtgtatcaaatatctgtttcagtttggttggactgtgcataact----tttataaaaaaaatttacagGCAAGAAATTAGAACTGCAACAAGCTCTATGACTTCAGTTCCAAAGCCATTAAAGTTTCTTCGCCCTCATTATGGTGCTCTAAAATCATTTTATGAAACA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213599359|gb|DB970335.1|DB970335
EST:     GTTCAGGATCCTGACCAGGGATTGCAGAAGGTTGCACTCGAGAGCATGAG                         GCAAGAAATTCGAACTTCCACGAGCTCTATGACTTCGGTTCCTAAGCCATT
genomic: GTTCAGGATCCTGACCAGGGATTGCAGAAGGTTGCACTCGAGAGCATGAGgtaaacctag ... tgtgttgcagGCAAGAAATTCGAACTTCCACGAGCTCTATGACTTCGGTTCCTAAGCCATT
EST: gi|213617174|gb|DB971293.1|DB971293
EST:     GTTCAGGATCCTGACCAGGGATTGCAGAAGGTTGCACTCGAGAGCATGAG                         GCAAGAAATTCGAACTTCCACGAGCTCTATGACTTCGGTTCCTAAGCCATT
genomic: GTTCAGGATCCTGACCAGGGATTGCAGAAGGTTGCACTCGAGAGCATGAGgtaaacctag ... tgtgttgcagGCAAGAAATTCGAACTTCCACGAGCTCTATGACTTCGGTTCCTAAGCCATT
EST: gi|208197687|gb|GD998894.1|GD998894
EST:     GTTCAGGATCCTGACCAGGGATTGCAGAAGGTTGCACTCGAGAGCATGAG                         GCAAGAAATTCGAACTTCCACGAGCTCTATGACTTCGGTTCCTAAGCCATT
genomic: GTTCAGGATCCTGACCAGGGATTGCAGAAGGTTGCACTCGAGAGCATGAGgtaaacctag ... tgtgttgcagGCAAGAAATTCGAACTTCCACGAGCTCTATGACTTCGGTTCCTAAGCCATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttattctagttttgaatgcatgtttgaaattggaatttgtggttgtgtgttgcagGCAAGAAATTCGAACTTCCACGAGCTCTATGACTTCGGTTCCTAAGCCATTGAAGTTCCTTCGTCCGCATTATGGCACTCTTAAGACCTATTATGAAACT
                      tttgaaatt  TA-rich tract