1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatgcctcaaagtttcgggtgattgagaaggttctgtttttatcttttcacatcctgatacaggtctgtggtgcacatatagATTTTCAGGGGGCTGGCTTATATCCACACTGTTCCTGGAGGTTGCCACAAAGATTTGAAGCCTCAAAATATACTG
species | Glycine max |
transcript | GLYMA06G43620.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATACTAATCAGAGCATGCCACTTATTTATGTAAAACTTTACATGCACCAG ATTTTCAGGGGGCTGGCTTATATCCACACTGTTCCTGGAGGTTGCCACAAAEST: gi|213590966|gb|DB973749.1|DB973749
genomic: ATACTAATCAGAGCATGCCACTTATTTATGTAAAACTTTACATGCACCAGgtatgcctca ... gcacatatagATTTTCAGGGGGCTGGCTTATATCCACACTGTTCCTGGAGGTTGCCACAAA
EST: ATACTAATCAGAGCATGCCACTTATTTATGTAAAACTTTACATGCACCAG ATTTTCAGGGGGCTGGCTTATATCCACACTGTTCCTGGAGGTTGCCACAAAEST: gi|213605410|gb|DB966931.1|DB966931
genomic: ATACTAATCAGAGCATGCCACTTATTTATGTAAAACTTTACATGCACCAGgtatgcctca ... gcacatatagATTTTCAGGGGGCTGGCTTATATCCACACTGTTCCTGGAGGTTGCCACAAA
EST: ATACTAATCAGAGCATGCCACTTATTTATGTAAAACTTTACATGCACCAG ATTTTCAGGGGGCTGGCTTATATCCACACTGTTCCTGGAGGTTGCCACAAAEST: gi|208139598|gb|GD934304.1|GD934304
genomic: ATACTAATCAGAGCATGCCACTTATTTATGTAAAACTTTACATGCACCAGgtatgcctca ... gcacatatagATTTTCAGGGGGCTGGCTTATATCCACACTGTTCCTGGAGGTTGCCACAAA
EST: ATACTAATCAGAGCATGCCACTTATTTATGTAAAACTTTACATGCACCAG ATTTTCAGGGGGCGTGGCTTATATCCACACTGTTCCTGGAGGTTGCCACAA
genomic: ATACTAATCAGAGCATGCCACTTATTTATGTAAAACTTTACATGCACCAGgtatgcctca ... gcacatatagATTTTCAGGGGGC-TGGCTTATATCCACACTGTTCCTGGAGGTTGCCACAA
aaggttctgtttttatcttttcacatcctgatacaggtctgtggtgcacatatagATTTTCAGGGGGCTGGCTTATATCCACACTGTTCCTGGAGGTTGCCACAAAGATTTGAAGCCTCAAAATATACTG
tcctgat putative branch site (score: 3)
tgtttttatctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcctcaaagtttcgggtgattgagaaggttctgtttttatcttttcacatcctgatacaggtctgtggtgcacatatagATTTTCAGGGGGCTGGCTTATATCCACACTGTTCCTGGAGGTTGCCACAAAGATTTGAAGCCTCAAAATATACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC