1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tgtctgtctgtctatataacttcagctttgggtatcacttgcttatactatttaatcgagtttatgccattacattgcactgatgcaaatgtttggccagGGAGTATCTTCCCATGGGTGGAAGCATAAAAATGATAGAAGAATCGCTGAAGCTGGCATTTGGAGACAACTCTGAGTTCATCAAGGATAAAAGAATAGCT
species | Glycine max |
transcript | GLYMA06G42830.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTGGAATGTGTTAGAGAAGCAGAGAGGAGGGTTGCCGGAAGTCAATTCAT GGAGTATCTTCCCATGGGTGGAAGCATAAAAATGATAGAAGAATCGCTGAAEST: gi|254336114|gb|GR841439.1|GR841439
genomic: TTGGAATGTGTTAGAGAAGCAGAGAGGAGGGTTGCCGGAAGTCAATTCATgtaagtaaaa ... gtttggccagGGAGTATCTTCCCATGGGTGGAAGCATAAAAATGATAGAAGAATCGCTGAA
EST: TTGGAATGTGTTAGAGAAGCAGAGAGGAGGGTTGCCGGAAGTCAATTCAT GGAGTATCTTCCCATGGGTGGAAGCATAAAAATGATAGAAGAATCGCTGAAEST: gi|37994754|gb|CF806351.1|CF806351
genomic: TTGGAATGTGTTAGAGAAGCAGAGAGGAGGGTTGCCGGAAGTCAATTCATgtaagtaaaa ... gtttggccagGGAGTATCTTCCCATGGGTGGAAGCATAAAAATGATAGAAGAATCGCTGAA
EST: TTGGAATGTGTTAGAGAAGCAGAGAGGAGGGTTGCCGGAAGTCAATTCAT GGAGTATCTTCCCATGGGTGGAAGCATAAAAATGATAGAAGAATCGCTGAAEST: gi|9565855|gb|BE475364.1|BE475364
genomic: TTGGAATGTGTTAGAGAAGCAGAGAGGAGGGTTGCCGGAAGTCAATTCATgtaagtaaaa ... gtttggccagGGAGTATCTTCCCATGGGTGGAAGCATAAAAATGATAGAAGAATCGCTGAA
EST: TTGGAATGTGTTAGAGAAGCAGAGAGGAGGGTTGCCGGAAGTCAATTCAT GGAGTATCTTCCCATGGGTGGAAGCATAAAAATGATAGAAGAATCGCTGAAEST: gi|7692894|gb|AW760993.1|AW760993
genomic: TTGGAATGTGTTAGAGAAGCAGAGAGGAGGGTTGCCGGAAGTCAATTCATgtaagtaaaa ... gtttggccagGGAGTATCTTCCCATGGGTGGAAGCATAAAAATGATAGAAGAATCGCTGAA
EST: TTGGAATGTGTTAGAGAAGCAGAGAGGAGGGTTGCCGGAAGTCAATTCAT GGAGTATCTTCCCATGGGTGGAAGCATAAAAATGATAGAAGAATCGCTGAA
genomic: TTGGAATGTGTTAGAGAAGCAGAGAGGAGGGTTGCCGGAAGTCAATTCATgtaagtaaaa ... gtttggccagGGAGTATCTTCCCATGGGTGGAAGCATAAAAATGATAGAAGAATCGCTGAA
tactatttaatcgagtttatgccattacattgcactgatgcaaatgtttggccagGGAGTATCTTCCCATGGGTGGAAGCATAAAAATGATAGAAGAATCGCTGAAGCTGGCATTTGGAGACAACTCTGAGTTCATCAAGGATAAAAGAATAGCT
cactgat putative branch site (score: 3)
attacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtctgtctgtctatataacttcagctttgggtatcacttgcttatactatttaatcgagtttatgccattacattgcactgatgcaaatgtttggccagGGAGTATCTTCCCATGGGTGGAAGCATAAAAATGATAGAAGAATCGCTGAAGCTGGCATTTGGAGACAACTCTGAGTTCATCAAGGATAAAAGAATAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- -ctgtctg
- - - - - - - - - - - - gctttgg
- - - - - - - - - - - - - - - - - -cacttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgcaaa