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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aatcaataaatcattattcttttcaataatttgagttttttttacaatcaactgttccttttatgggtaacataattttatctatcttattaatttctagGTGTTGATGGGGGATTTGATAACAATGAGCCTGAATATGAGGAAACACATAGTGTAGTTATATTACCTGAGTATGTTTCTCTTCCATTCCCTTCTGTGGA

Basic information

species Glycine max
transcript GLYMA06G39770.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G39770.1 (Glycine max), 3'ss of exon 2
lower sequence: AT3G20630.1 (Arabidopsis thaliana), 3'ss of exon 2
aatcaataaatcattattcttttcaataatttgagttttttttacaatcaactgttccttttatgggtaacataattttatctatcttattaatttctagGTGTTGATGGGGGATTTGATAACAATGAGCCTGAATATGAGGAAACACATAGTGTAGTTATATTACCTGAGTATGTTTCTCTTCCATTCCCTTCTGTGGA
  |  ||| |  || ||  ||    | ||  ||   | | | |||       ||  | |    | |  |   |  ||||       | || |||||  |||||||||||| || ||||||||||||||||| || || |||||  |  ||||  |||| ||| | || || | |||||| || || || |||||||| ||
-gtatatatacaatgatgatt----acaa--tgccgtatctatactgatttttgaacatagagtcgagagattggttttgaactgttaatcaatttgcagGTGTTGATGGAGGCTTTGATAACAATGAGCCAGAGTACGAGGAGTCTTATAGCATAGTCATACTTCCGGATTTTGTTTCACTCCCGTTTCCTTCTGTTGA

upper sequence: GLYMA06G39770.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv19s0014g03920.t01 (Vitis vinifera), 3'ss of exon 2
-aatcaata-aatcattattcttttcaataatttgagttttttttacaatcaactgttccttttatgggtaacataattttatctatcttatt-aatttctagGTGTTGATGGGGGATTTGATAACAATGAGCCTGAATATGAGGAAACACATAGTGTAGTTATATTACCTGAGTATGTTTCTCTTCCATTCCCTTCTGTGGA
   |||  | |  || |    |||| |     | ||   || || |          |||  |    | | | |||| || || ||| ||  ||  | ||| ||||||||| ||||||||||| || ||||| ||||||||||| ||| | |||| | |||| ||||| |||   || || ||||||||||| || ||||||||
ttgtcatgatagccactcagatttttagattctcga---ttgttaatttgtgggaattctgtagtggagaagcatatttatagctacctggtttgagttccagGTGTTGACGGGGGATTTGACAATAATGAACCTGAATATGAAGAAGCTCATAATATAGTCATATTGCCTAGTTACGTATCTCTTCCATTTCCATCTGTGGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatcaactgttccttttatgggtaacataattttatctatcttattaatttctagGTGTTGATGGGGGATTTGATAACAATGAGCCTGAATATGAGGAAACACATAGTGTAGTTATATTACCTGAGTATGTTTCTCTTCCATTCCCTTCTGTGGA
                                          tattaat  putative branch site (score: 2)
                                       tcttatt  CT-rich tract
                      taacataattttatct  TA-rich tract