1 5' 3' | 2 5' 3' | 3 5' 3' |
...tgagtgttcaaagaatcgtcctattgtggatttccatatctgttgatgtcgctatatgttttatagaacacatatttcaatctttgtaggtttcttgtagGTACCATCCTGCTTGCATGGGCATGACTATTGAAGAAGCTAAGAAACTAGATCATTTTGTATGTTCCGAATGTTCATCTGATGATGATATGAAGAAACCC
species | Glycine max |
transcript | GLYMA06G34850.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CATGGTACAATTGTTGTAAGGGTGTCAAGGATTG GTACCATCCTGCTTGCATGGGCATGACTATTGAAGAAGCTAAGAAACTAGEST: gi|208216064|gb|GE008972.1|GE008972
genomic: CATGGTACAA-TG-TG-AAGGGTG-CAAGGATTGgtaagactcg ... tttcttgtagGTACCATCCTGCTTGCATGGGCATGACTATTGAAGAAGCTAAGAAACTAG
EST: ACAATGTGAAGGGTGCAAGGATTG GTACCATCCTGCTTGCATGGGCATGATTATTGAAGAAGCTAAGAAACTAGAEST: gi|208169033|gb|GD971418.1|GD971418
genomic: ACAATGTGAAGGGTGCAAGGATTGgtaagactcg ... tttcttgtagGTACCATCCTGCTTGCATGGGCATGACTATTGAAGAAGCTAAGAAACTAGA
EST: TGGTACAATGTGAAGGGTGCAAGGATTG GTACCATCCTGCTTGCATGGGCATGACTATTGAAGAAGCTAAGAAACTAGAEST: gi|207806317|gb|GD778794.1|GD778794
genomic: TGGTACAATGTGAAGGGTGCAAGGATTGgtaagactcg ... tttcttgtagGTACCATCCTGCTTGCATGGGCATGACTATTGAAGAAGCTAAGAAACTAGA
EST: CCTTATAACCCGGATGATCTCATGGTACAATGTGAAGGGTGCAAGGATTG GTACCATCCTGCTTGCATGGGCATGACTATTGAAGAAGCTAAGAAACTAGAEST: gi|193635788|gb|FK579359.1|FK579359
genomic: CCTTATAACCCGGATGATCTCATGGTACAATGTGAAGGGTGCAAGGATTGgtaagactcg ... tttcttgtagGTACCATCCTGCTTGCATGGGCATGACTATTGAAGAAGCTAAGAAACTAGA
EST: GTACAATGTGAAGGGTGCAAGGATTG GTACCATCCTGCTTGCATGGGCATGACTATTGAAGAAGCTAAGAAACTAGAEST: gi|151393735|gb|EV263610.1|EV263610
genomic: GTACAATGTGAAGGGTGCAAGGATTGgtaagactcg ... tttcttgtagGTACCATCCTGCTTGCATGGGCATGACTATTGAAGAAGCTAAGAAACTAGA
EST: CCTTATAACCCGGATGATCTCATGGTACAATGTGAAGGGTGCAAGGATTG GTACCATCCTGCTTGCATGGGCATGACTATTGAAGAAGCTAAGAAACTAGA
genomic: CCTTATAACCCGGATGATCTCATGGTACAATGTGAAGGGTGCAAGGATTGgtaagactcg ... tttcttgtagGTACCATCCTGCTTGCATGGGCATGACTATTGAAGAAGCTAAGAAACTAGA
atgtcgctatatgttttatagaacacatatttcaatctttgtaggtttcttgtagGTACCATCCTGCTTGCATGGGCATGACTATTGAAGAAGCTAAGAAACTAGATCATTTTGTATGTTCCGAATGTTCATCTGATGATGATATGAAGAAACCC
tgttgat putative branch site (score: 4)
tttcttgt putative PPT
tatatgttttatagaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgagtgttcaaagaatcgtcctattgtggatttccatatctgttgatgtcgctatatgttttatagaacacatatttcaatctttgtaggtttcttgtagGTACCATCCTGCTTGCATGGGCATGACTATTGAAGAAGCTAAGAAACTAGATCATTTTGTATGTTCCGAATGTTCATCTGATGATGATATGAAGAAACCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
tgagtgt
- - - - - - - - - -cctattg
- - - - - - - - - - - - - - - - - - - - - -tgatgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacacat