1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...catgtgcactggcttatgtctcacagttttcaattttcttaaggaggttttgcgcttttgtatatgttttctattgacataatgtcttctcctctctcagAAATGGTGCACAGAAGCTACTTGGCATTTTGATAGCTGTTGGTGAGGCAGTTGCATATGTTCTTTCTGGAATGTATGGTAGTGTGGGTCAACTTGGAGTG
species | Glycine max |
transcript | GLYMA06G32680.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCGAAGATCATTGAAGTGGACAACAATGTAAGGGAGGATCGTGCTCTCTT AAATGGTGCACAGAAGCTACTTGGCATTTTGATAGCTGTTGGTGAGGCAGTEST: gi|254327676|gb|GR834641.1|GR834641
genomic: TCGAAGATCATTGAAGTGGACAACAATGTAAGGGAGGATCGTGCTCTCTTgtaagtatct ... cctctctcagAAATGGTGCACAGAAGCTACTTGGCATTTTGATAGCTGTTGGTGAGGCAGT
EST: TCGAAGATCATTGAAGTGGACAACAATGTAAGGGAGGATCGTGCTCTCTT AAATGGTGCACAGAAGCTACTTGGCATTTTGATAGCTGTTGGTGAGGCAGTEST: gi|298169818|gb|HO018442.1|HO018442
genomic: TCGAAGATCATTGAAGTGGACAACAATGTAAGGGAGGATCGTGCTCTCTTgtaagtatct ... cctctctcagAAATGGTGCACAGAAGCTACTTGGCATTTTGATAGCTGTTGGTGAGGCAGT
EST: TCGAAGATCATTGAAGTGGACAACAATGTAAGGGAGGATCGTGCTCTCTT AAATGGTGCACAGAAGCTACTTGGCATTTTGATAGCTGTTGGTGAGGCAGTEST: gi|17519461|gb|BM188503.1|BM188503
genomic: TCGAAGATCATTGAAGTGGACAACAATGTAAGGGAGGATCGTGCTCTCTTgtaagtatct ... cctctctcagAAATGGTGCACAGAAGCTACTTGGCATTTTGATAGCTGTTGGTGAGGCAGT
EST: CGAAGATCATTGAAGTGGACAACAATGTAAGGGAGGATCGTGCATCTCTT AAATGGTGCACAGAAGCTACTTGGCATTTTGATAGCTGTTGGTGAGGCAGEST: gi|12773090|gb|BG238017.1|BG238017
genomic: CGAAGATCATTGAAGTGGACAACAATGTAAGGGAGGATCGTGC-TCTCTTgtaagtatct ... cctctctcagAAATGGTGCACAGAAGCTACTTGGCATTTTGATAGCTGTTGGTGAGGCAG
EST: TCGAAGATCATTGAAGTGGACAACAATGTAAGGGAAGATCGTGCTCTCTT AAATGGTGCACAGAAGCTACTTGGCATTTTGATAGCTTGTTG-TGAGGCAA
genomic: TCGAAGATCATTGAAGTGGACAACAATGTAAGGGAGGATCGTGCTCTCTTgtaagtatct ... cctctctcagAAATGGTGCACAGAAGCTACTTGGCATTTTGATAGCT-GTTGGTGAGGCA-
ggttttgcgcttttgtatatgttttctattgacataatgtcttctcctctctcagAAATGGTGCACAGAAGCTACTTGGCATTTTGATAGCTGTTGGTGAGGCAGTTGCATATGTTCTTTCTGGAATGTATGGTAGTGTGGGTCAACTTGGAGTG
tattgac putative branch site (score: 2)
tgtcttctcctctctc putative PPT
ttttgtatatgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catgtgcactggcttatgtctcacagttttcaattttcttaaggaggttttgcgcttttgtatatgttttctattgacataatgtcttctcctctctcagAAATGGTGCACAGAAGCTACTTGGCATTTTGATAGCTGTTGGTGAGGCAGTTGCATATGTTCTTTCTGGAATGTATGGTAGTGTGGGTCAACTTGGAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG