Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacgaacaccatgaactaaacctgagcccgctgtacacgatcaccgcccactcactcagttttgtttctctttcttttatcagAGGACTACACGGAAGAGCTCGCCGTCGCACACATTCGGCGACTCCTCGACATCGTGGCCTGCACCACCTCCTTCGCCTCCGCCTCCGCCGCCGCAGCAGC

Basic information

species Glycine max
transcript GLYMA06G30000.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G30000.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G318635_T01 (Zea mays), 3'ss of exon 4
gtaacgaacaccatgaactaaacctgagcccgctgtacacgatca-ccgcccactcactcagttttgtttctctttcttttat-cagAGGACTACACGGAAGAGCTCGCCGTCGCACACATTCGGCGACTCCTCGACATCGTGGCCTGCACCACCTCCTTCGCCTCCGCCTCCGCCGCCGCAGCAGC-
||| ||| | ||    |||   |  | ||    ||    |  |||  | |  || ||| |        | |||    |      |||||||||||||||| |||||||||||||| ||| | || || || ||||||||||| ||||||||||||   ||||   | |     |||   || | ||| 
gta-cgagc-ccgccgactcctcgggtgcaaaatgcgagcagtcagtcactgacccacacccaccacctcctcgccgtcccgcgcagAGGACTACACGGAGGAGCTCGCCGTCGCGCACGTGCGTCGCCTGCTCGACATCGTCGCCTGCACCACCGTGTTCGGGGC-GAAGAAGCCCGAGCCGAAGCC

upper sequence: GLYMA06G30000.1 (Glycine max), 3'ss of exon 2
lower sequence: AT4G28080.1 (Arabidopsis thaliana), 3'ss of exon 4
gtaacgaacaccatgaactaa--acctgagcccgctgtacacgatcaccgccc-------actcactcagttttgtttctctttcttttatcagAGGACTACACGGAAGAGCTCGCCGTCGCACACATTCGGCGACTCCTCGACATCGTGGCCTGCACCACCTCCTTCGCCTCCGCCTCCGCCGCCGCAGCAGC-
|||        | ||| ||||    ||     | |        || ||  |||        | |||  ||  || |||   |||   ||  |||||||||| ||||| ||||  |||  ||| ||||| ||||| |||||||||||||| || ||||||||| | || |  |||| |    || |||  |   | 
gtactc--tttcttgatctaacggtctacattctccagttgaaataacttccctagggttgcccacagaggattatttaattttgaattcgcagAGGACTATACGGAGGAGCAAGCCACCGCGCACATACGGCGGCTCCTCGACATCGTCGCTTGCACCACCGCATTTGG-TCCGTCGAAACCCCCGGTGTCTCG

upper sequence: GLYMA06G30000.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv11s0037g00840.t01 (Vitis vinifera), 3'ss of exon 4
gtaacgaacaccatgaactaaacctgagcccgctgtacacgatcaccgcccactcactcagttttgtttctctttc----ttttatcagAGGACTACACGGAAGAGCTCGCCGTCGCACACATTCGGCGACTCCTCGACATCGTGGCCTGCACCACCTCCTTCGCCTCCGCCTCCGCCGCCGCAGCAGC
      |  ||    | | ||| |  | |   |  | | | | |  |  | |   |||   | |     |    ||     | |  |||||||||||||||| || |||||||| |||||| | || ||||| ||||||||||| |||||||| | ||||||||  ||| | ||  |  || |   |  
----gtactactcccatccaaagcccaacatccatttccctaccttcctcgatctactacctctcaccacctaatcgcaactgttgcagAGGACTACACGGAGGACCTCGCCGTTGCACACGTCCGACGACTGCTCGACATCGTCGCCTGCACTAGCTCCTTCGGTTCCCCATCTTCTTCCCCTAAAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgctgtacacgatcaccgcccactcactcagttttgtttctctttcttttatcagAGGACTACACGGAAGAGCTCGCCGTCGCACACATTCGGCGACTCCTCGACATCGTGGCCTGCACCACCTCCTTCGCCTCCGCCTCCGCCGCCGCAGCAGC
                    cactcac  putative branch site (score: 2)
                      ctcactcagttttgtt  CT-rich tract
                                          tttcttttat  TA-rich tract