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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgaatttgtgtaccaaagatcttactagaaaacaattttgaaatgatgaaatgtttgtcgagtgtcagttaggttttttttccatcttgtgtgttacataactttgtggcatattttgagttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCACCGACTGTACGATTTGTGTCTCGCATGTTTCATCCAAATA

Basic information

species Glycine max
transcript GLYMA06G20310.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G20310.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os05g08960.1 (Oryza sativa), 3'ss of exon 3
gtgagtgaatttgtgtaccaaagatcttactagaaaacaattttgaaatgatgaaatgtttgt-cgagtgtcagttaggttttttttccatcttgtgtgttacataactttgtggcatattttgagttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCACCGACTGTACGATTTGTGTCTCGCATGTTTCATCCAAATA
                        || |  | | |   |   |||  ||  ||   |  |||| || ||  |   | |   | |||| ||| ||      |    || | |||    || || |   |   |||| ||||||||| ||||||| || |||||||| || ||||| || || ||||| || || |||||||| ||||| ||||||||||| || |
------------------------tcctttttgtattta---ttggcattttg---ttcttgtacgtgtcaccaattgtactcttttacatgtta-acactgtcaaattatgtt---tacttcgccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCACCTACAGTGCGATTTGTTTCTCGGATGTTTCATCCTAACA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254315587|gb|GR825396.1|GR825396
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|192296721|gb|FG991289.1|FG991289
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|192306256|gb|FG996856.1|FG996856
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|15661604|gb|BI698975.1|BI698975
EST:     TTTGGTCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TTTGGTCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|254314541|gb|GR829534.1|GR829534
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|192323046|gb|FK015232.1|FK015232
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|254336123|gb|GR841448.1|GR841448
EST:     CTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: CTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|15662518|gb|BI699889.1|BI699889
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|254317876|gb|GR832044.1|GR832044
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|27426316|gb|CA937836.1|CA937836
EST:     TTTGGTCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TTTGGTCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|254319558|gb|GR829070.1|GR829070
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|7589486|gb|AW705259.1|AW705259
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|254341096|gb|GR854824.1|GR854824
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|192330853|gb|FK023068.1|FK023068
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|17963109|gb|BM269862.1|BM269862
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|254320600|gb|GR827049.1|GR827049
EST:     T-CTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|254319557|gb|GR829069.1|GR829069
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|15337404|gb|BI498060.1|BI498060
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|254349254|gb|GR860052.1|GR860052
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|7924281|gb|AW830307.1|AW830307
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|254327616|gb|GR840180.1|GR840180
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|254346548|gb|GR856270.1|GR856270
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|209703448|gb|BW676236.1|BW676236
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|16997113|gb|BM086485.1|BM086485
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|192298537|gb|FG988508.1|FG988508
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|254336122|gb|GR841447.1|GR841447
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|192296000|gb|FG989408.1|FG989408
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAT
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|37996521|gb|CF808110.1|CF808110
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|254349220|gb|GR860018.1|GR860018
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|254349219|gb|GR860017.1|GR860017
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|17153657|gb|BM143590.1|BM143590
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACTCTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|20813094|gb|BQ297564.1|BQ297564
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|26058698|gb|CA801612.1|CA801612
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|151408706|gb|EV278514.1|EV278514
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|254314540|gb|GR829533.1|GR829533
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|192305758|gb|FG995714.1|FG995714
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|254339398|gb|GR848115.1|GR848115
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|254315586|gb|GR825395.1|GR825395
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|7233698|gb|AW569042.1|AW569042
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|16997209|gb|BM086581.1|BM086581
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|13791412|gb|BG654003.1|BG654003
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|254341097|gb|GR854825.1|GR854825
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|7284017|gb|AW596617.1|AW596617
EST:     TTTGGTCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TTTGGTCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|58018058|gb|CX704800.1|CX704800
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|192305759|gb|FG995715.1|FG995715
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|254322473|gb|GR837887.1|GR837887
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|21257139|gb|BQ454027.1|BQ454027
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttttttccatcttgtgtgttacataactttgtggcatattttgagttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCACCGACTGTACGATTTGTGTCTCGCATGTTTCATCCAAATA
                      acataac  putative branch site (score: 3)
                                     atattttgagttatt  TA-rich tract