1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...atgtagaatcattttggggattggatgctctaaaatggatcttgtggttggtttcattggctaggcttgcattatttacactccgttgatgtgattacagATAAGATTCATGGCAAAATGGGCGAAGGAACTTTTGGGCAGGTCTTGGAGTGCTGGGACAGAGAAAGGAAGGAAATGGTCGCCATAAAAATTGTTCGTGG
species | Glycine max |
transcript | GLYMA06G18530.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAAAGATGGCCATTACATGTTTGAGCTTGGAGATAATTTAACTTCTCGCT ATAAGATTCATGGCAAAATGGGCGAAGGAACTTTTGGGCAGGTCTTGGAGTEST: gi|192330547|gb|FK021250.1|FK021250
genomic: CAAAGATGGCCATTACATGTTTGAGCTTGGAGATAATTTAACTTCTCGCTgtaaatacac ... gtgattacagATAAGATTCATGGCAAAATGGGCGAAGGAACTTTTGGGCAGGTCTTGGAGT
EST: CAAAGATGGCCATCACATGTTTGAGCTTGGAGATAATTTAACTTCTCGCT ATAAGATTCATGGCAAAATGGGCGAAGGAACTTTTGGGCAGGTCTTGGAGTEST: gi|298183614|gb|HO028827.1|HO028827
genomic: CAAAGATGGCCATTACATGTTTGAGCTTGGAGATAATTTAACTTCTCGCTgtaaatacac ... gtgattacagATAAGATTCATGGCAAAATGGGCGAAGGAACTTTTGGGCAGGTCTTGGAGT
EST: CAAAGATGGCCATTACATGTTTGAGCTTGGAGATAATTTAACTTCTCGCT ATAAGATTCATGGCAAAATAGGCGAAGGAACTTTTGGGCAGGTCTTGGAGTEST: gi|298177034|gb|HO023395.1|HO023395
genomic: CAAAGATGGCCATTACATGTTTGAGCTTGGAGATAATTTAACTTCTCGCTgtaaatacac ... gtgattacagATAAGATTCATGGCAAAATGGGCGAAGGAACTTTTGGGCAGGTCTTGGAGT
EST: CAAAGATGGCCATTACATGTTTGAGCTTGGAGATAATTTAACTTCTCGCT ATAAGATTCATGGCAAAATGGGCGAAGGAACTTTTGGGCAGGTCTTGGAGTEST: gi|10237570|gb|BE806458.1|BE806458
genomic: CAAAGATGGCCATTACATGTTTGAGCTTGGAGATAATTTAACTTCTCGCTgtaaatacac ... gtgattacagATAAGATTCATGGCAAAATGGGCGAAGGAACTTTTGGGCAGGTCTTGGAGT
EST: CAAAGATGGCCATTACATGTTTGAGCTTGGAGATAATTTAACTTCTCGCT ATAAGATTCATGGCAAAATGGGCGAAGGAACTTTTGGGCAGGTCTTGGAGTEST: gi|17518727|gb|BM187769.1|BM187769
genomic: CAAAGATGGCCATTACATGTTTGAGCTTGGAGATAATTTAACTTCTCGCTgtaaatacac ... gtgattacagATAAGATTCATGGCAAAATGGGCGAAGGAACTTTTGGGCAGGTCTTGGAGT
EST: CAAAGATGGCCATTACATGTTTGAGCTTGGAGATAATTTAACTTCTCGCT ATAAGATTCATGGCAAAATGGGCGAAGGAACTTTTGGGCAGGTCTTGGAGT
genomic: CAAAGATGGCCATTACATGTTTGAGCTTGGAGATAATTTAACTTCTCGCTgtaaatacac ... gtgattacagATAAGATTCATGGCAAAATGGGCGAAGGAACTTTTGGGCAGGTCTTGGAGT
ggttggtttcattggctaggcttgcattatttacactccgttgatgtgattacagATAAGATTCATGGCAAAATGGGCGAAGGAACTTTTGGGCAGGTCTTGGAGTGCTGGGACAGAGAAAGGAAGGAAATGGTCGCCATAAAAATTGTTCGTGG
cgttgat putative branch site (score: 5)
attatttaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtagaatcattttggggattggatgctctaaaatggatcttgtggttggtttcattggctaggcttgcattatttacactccgttgatgtgattacagATAAGATTCATGGCAAAATGGGCGAAGGAACTTTTGGGCAGGTCTTGGAGTGCTGGGACAGAGAAAGGAAGGAAATGGTCGCCATAAAAATTGTTCGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - tttgggg
- - - - - - - - - - - ggatgct
- - - - - - - - - - - - - - - - - - - - - - tggttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tacactc