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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tattgacaggctaggaggaagatagagttattcaaattacaaagtaaaaggaaaactcatactgaaaggctgatttgtctctcagtatattctttgacagGTTAAATGCTTTATGAAGCAATTACTCTCTGGTCTTGAGCATTGTCACAGCCGGGGGGTGTTGCACCGTGATATCAAGGGCTCCAATCTGCTTATTGACA

Basic information

species Glycine max
transcript GLYMA06G17460.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G17460.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv17s0000g00620.t01 (Vitis vinifera), 3'ss of exon 2
---tattgacaggctaggaggaagatagagttattcaaattacaaagtaaaaggaaaactcatactgaaaggctgatttgtctctcagtatattctttgacagGTTAAATGCTTTATGAAGCAATTACTCTCTGGTCTTGAGCATTGTCACAGCCGGGGGGTGTTGCACCGTGATATCAAGGGCTCCAATCTGCTTATTGACA
     |  | |           |  || ||| | | ||  | |    |   ||| |  |   |  ||    ||||     ||||   || |   ||||  ||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||  || ||  |||| || ||||||||||| ||||||||| | ||  |||
atgggtctaaaattgcccttacatgtaaagtaaattaatctcc---tttttaggtattccttttatggttagctgcccattctcaatgtcttccctttcgcagGTCAAATGCTTTATGAAGCAATTACTCTCTGGGCTTGAGCATTGTCACAACCAAGGTGTTCTGCATCGAGATATCAAGGGTTCCAATCTGTTAATCAACA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaaggaaaactcatactgaaaggctgatttgtctctcagtatattctttgacagGTTAAATGCTTTATGAAGCAATTACTCTCTGGTCTTGAGCATTGTCACAGCCGGGGGGTGTTGCACCGTGATATCAAGGGCTCCAATCTGCTTATTGACA
                      ggctgat  putative branch site (score: 4)
                                          tattcttt  putative PPT
                                        tatattcttt  TA-rich tract