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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaaggacaatgatttctcatattattggtttggtttcaattgtgaacactattgacttgtttgagtttaatgtttcagTATCTTTCTGTTGGGCACCCACCTTATTACAAAGGATTAGATTACATTTATGAGGACCGTGGTGAG

Basic information

species Glycine max
transcript GLYMA06G15890.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209708698|gb|BW678879.1|BW678879
EST:     AAGGTCAGATTGTGAGGGTGGACAAGGAGAAATATCTCAATAGCGTCAAT                         TATCTTTCTGTTGGGCACCCACCTTATTACAAAGGATTAGATTACATTTAT
genomic: AAGGTCAGATTGTGAGGGTGGACAAGGAGAAATATCTCAATAGCGTCAATgtaagaagga ... aatgtttcagTATCTTTCTGTTGGGCACCCACCTTATTACAAAGGATTAGATTACATTTAT
EST: gi|192316855|gb|FK006082.1|FK006082
EST:     AAGGTCAGATTGTGAGGGTGGACAAGGAGAAATATCTCAATAGCGTCAAT                         TATCTTTCTGTTGGGCACCCACCTTATTACAAAGGATTAGATTACATTTAT
genomic: AAGGTCAGATTGTGAGGGTGGACAAGGAGAAATATCTCAATAGCGTCAATgtaagaagga ... aatgtttcagTATCTTTCTGTTGGGCACCCACCTTATTACAAAGGATTAGATTACATTTAT
EST: gi|151403156|gb|EV272966.1|EV272966
EST:     AAGGTCAGATTGTGAGGGTGGACAAGGAGAAATATCTCAATAGCGTCAAT                         TATCTTTCTGTTGGGCACCCACCTTATTACAAAGGATTAGATTACATTTAT
genomic: AAGGTCAGATTGTGAGGGTGGACAAGGAGAAATATCTCAATAGCGTCAATgtaagaagga ... aatgtttcagTATCTTTCTGTTGGGCACCCACCTTATTACAAAGGATTAGATTACATTTAT
EST: gi|213600560|gb|DB960108.1|DB960108
EST:     AAGGTCAGATTGTGAGGGTGGACAAGGAGAAATATCTCAATAGCGTCAAT                         TATCTTTCTGTTGGGCACCCACCTTATTACAAAGGATTAGATTACATTTAT
genomic: AAGGTCAGATTGTGAGGGTGGACAAGGAGAAATATCTCAATAGCGTCAATgtaagaagga ... aatgtttcagTATCTTTCTGTTGGGCACCCACCTTATTACAAAGGATTAGATTACATTTAT
EST: gi|192317603|gb|FK008999.1|FK008999
EST:     AAGGTCAGATTGTGAGGGTGGACAAGGAGAAATATCTCAATAGCGTCAAT                         TATCTTTCTGTTGGGCACCCACCTTATTACAAAGGATTAGATTACATTTAT
genomic: AAGGTCAGATTGTGAGGGTGGACAAGGAGAAATATCTCAATAGCGTCAATgtaagaagga ... aatgtttcagTATCTTTCTGTTGGGCACCCACCTTATTACAAAGGATTAGATTACATTTAT
EST: gi|209706472|gb|BW670831.1|BW670831
EST:     AAGGTCAGATTGTGAGGGTGGACAAGGAGAAATATCTCAATAGCGTCAAT                         TATCTTTCTGTTGGGCACCCACCTTATTACAAAGGATTAGATTACATTTAT
genomic: AAGGTCAGATTGTGAGGGTGGACAAGGAGAAATATCTCAATAGCGTCAATgtaagaagga ... aatgtttcagTATCTTTCTGTTGGGCACCCACCTTATTACAAAGGATTAGATTACATTTAT
EST: gi|19345850|gb|BM890730.1|BM890730
EST:     AAGGTCAGATTGTGAGGGTGGACAAGGAGAAATATCTCAATAGCGTCAAT                         TATCTTTCTGTTGGGCACCCACCTTATTACAAAGGATTAGATTACATTTAT
genomic: AAGGTCAGATTGTGAGGGTGGACAAGGAGAAATATCTCAATAGCGTCAATgtaagaagga ... aatgtttcagTATCTTTCTGTTGGGCACCCACCTTATTACAAAGGATTAGATTACATTTAT
EST: gi|298178035|gb|HO023884.1|HO023884
EST:     AAGGTCAGATTGTGAGGGTGGACAAGGAGAAATATCTCAATAGCGTCAAT                         TATCTTTCTGTTGGGCACCCACCTTATCACAAAGGATTAGATTACATTTAT
genomic: AAGGTCAGATTGTGAGGGTGGACAAGGAGAAATATCTCAATAGCGTCAATgtaagaagga ... aatgtttcagTATCTTTCTGTTGGGCACCCACCTTATTACAAAGGATTAGATTACATTTAT
EST: gi|192317604|gb|FK009000.1|FK009000
EST:     AAGGTCAGATTGTGAGGGTGGACAAGGAGAAATATCTCAATAGCGTCAAT                         TATCTTTTTGTTGGGCACCCCCCTTATTACAAAGGATTAGATTACATTTAT
genomic: AAGGTCAGATTGTGAGGGTGGACAAGGAGAAATATCTCAATAGCGTCAATgtaagaagga ... aatgtttcagTATCTTTCTGTTGGGCACCCACCTTATTACAAAGGATTAGATTACATTTAT
EST: gi|213603478|gb|DB966629.1|DB966629
EST:     AAGGTCAGATTGTGAGGGTGGACAAGGAGAAATATCTCAATAGCGTCAAT                         TATCTTTCTGTTGGGCACCCACCTTATTACAAAGGATTAGATTACATTTAT
genomic: AAGGTCAGATTGTGAGGGTGGACAAGGAGAAATATCTCAATAGCGTCAATgtaagaagga ... aatgtttcagTATCTTTCTGTTGGGCACCCACCTTATTACAAAGGATTAGATTACATTTAT
EST: gi|31306990|gb|CD392193.1|CD392193
EST:     AAGGTCAGATTGTGAGGGTGGACAAGGAGAAATATCTCAATAGCGTCAAT                         TATCTTTCTGTTGGGCACCCACCTTATTACCAAGGATTAGATTACATTTAT
genomic: AAGGTCAGATTGTGAGGGTGGACAAGGAGAAATATCTCAATAGCGTCAATgtaagaagga ... aatgtttcagTATCTTTCTGTTGGGCACCCACCTTATTACAAAGGATTAGATTACATTTAT
EST: gi|209712066|gb|BW674213.1|BW674213
EST:     AAGGTCAGATTGTGAGGGTGGACAAGGAGAAATATCTCAATAGCGTCAAT                         TATCTTTCTGTTGGGCACCCACCTTATTACAAAGGATTAGATTACATTTAT
genomic: AAGGTCAGATTGTGAGGGTGGACAAGGAGAAATATCTCAATAGCGTCAATgtaagaagga ... aatgtttcagTATCTTTCTGTTGGGCACCCACCTTATTACAAAGGATTAGATTACATTTAT
EST: gi|209708699|gb|BW678880.1|BW678880
EST:     AAGGTCAGATTGTGAGGGTGGACAAGGAGAAATATCTCAATAGCGTCAAT                         TATCTTTCTGTTGGGCACCCACCTTATTACAAAGGATTAGATTACATTTAT
genomic: AAGGTCAGATTGTGAGGGTGGACAAGGAGAAATATCTCAATAGCGTCAATgtaagaagga ... aatgtttcagTATCTTTCTGTTGGGCACCCACCTTATTACAAAGGATTAGATTACATTTAT
EST: gi|120530396|gb|EH258529.1|EH258529
EST:     AAGGTCAGATTGTGAGGGTGGACAAGGAGAAATATCTCAATAGCGTCAAT                         TATCTTTCTGTTGGGCACCCACCTTATTACAAAGGATTAGATTACATTTAT
genomic: AAGGTCAGATTGTGAGGGTGGACAAGGAGAAATATCTCAATAGCGTCAATgtaagaagga ... aatgtttcagTATCTTTCTGTTGGGCACCCACCTTATTACAAAGGATTAGATTACATTTAT
EST: gi|151401315|gb|EV271129.1|EV271129
EST:     AAGGTCAGATTGTGAGGGTGGACAAGGAGAAATATCTCAATAGCGTCAAT                         TATCTTTCTGTTGGGCACCCACCTTATTACAAAGGATTAGATTACATTTAT
genomic: AAGGTCAGATTGTGAGGGTGGACAAGGAGAAATATCTCAATAGCGTCAATgtaagaagga ... aatgtttcagTATCTTTCTGTTGGGCACCCACCTTATTACAAAGGATTAGATTACATTTAT
EST: gi|298177637|gb|HO027304.1|HO027304
EST:     AAGGTCAGATTGTGAGGGTGGACAAGGAGAAATATCTCAATAGCGTCAAT                         TATCTTTCTGTTGGGCACCCACCTTATCACAAAGGATTAGATTACATTTAT
genomic: AAGGTCAGATTGTGAGGGTGGACAAGGAGAAATATCTCAATAGCGTCAATgtaagaagga ... aatgtttcagTATCTTTCTGTTGGGCACCCACCTTATTACAAAGGATTAGATTACATTTAT
EST: gi|151403653|gb|EV273463.1|EV273463
EST:     AAGGTCAGATTGTGAGGGTGGACAAGGAGAAATATCTCAATAGCGTCAAT                         TATCTTTCTGTTGGGCACCCACCTTATTACAAAGGATTAGATTACATTTAT
genomic: AAGGTCAGATTGTGAGGGTGGACAAGGAGAAATATCTCAATAGCGTCAATgtaagaagga ... aatgtttcagTATCTTTCTGTTGGGCACCCACCTTATTACAAAGGATTAGATTACATTTAT
EST: gi|209711472|gb|BW665224.1|BW665224
EST:     AAGGTCAGATTGTGAGGGTGGACAAGGAGAAATATCTCAATAGCGTCAAT                         TATCTTTCTGTTGGGCACCCACCTTATTACAAAGGATTAGATTACATTTAT
genomic: AAGGTCAGATTGTGAGGGTGGACAAGGAGAAATATCTCAATAGCGTCAATgtaagaagga ... aatgtttcagTATCTTTCTGTTGGGCACCCACCTTATTACAAAGGATTAGATTACATTTAT
EST: gi|213617933|gb|DB957386.1|DB957386
EST:     AAGGTCAGATTGTGAGGGTGGACAAGGAGAAATATCTCAATAGCGTCAAT                         TATCTTTCTGTTGGGCACCCACCTTATTACAAAGGATTAGATTACATTTAT
genomic: AAGGTCAGATTGTGAGGGTGGACAAGGAGAAATATCTCAATAGCGTCAATgtaagaagga ... aatgtttcagTATCTTTCTGTTGGGCACCCACCTTATTACAAAGGATTAGATTACATTTAT
EST: gi|213611375|gb|DB983967.1|DB983967
EST:     AAGGTCAGATTGTGAGGGTGGACAAGGAGAAATATCTCAATAGCGTCAAT                         TATCTTTCTGTTGGGCACCCACCTTATTACAAAGGATTAGATTACATTTAT
genomic: AAGGTCAGATTGTGAGGGTGGACAAGGAGAAATATCTCAATAGCGTCAATgtaagaagga ... aatgtttcagTATCTTTCTGTTGGGCACCCACCTTATTACAAAGGATTAGATTACATTTAT
EST: gi|151405413|gb|EV275227.1|EV275227
EST:     ATAGCGTCAAT                         TATCTTTCTGTTGGGCACCCACCTTATTACAAAGGATTAGATTACATTTAT
genomic: ATAGCGTCAATgtaagaagga ... aatgtttcagTATCTTTCTGTTGGGCACCCACCTTATTACAAAGGATTAGATTACATTTAT
EST: gi|192319047|gb|FK009071.1|FK009071
EST:     AAGGTCAGATTGTGAGGGTGGACAAGGAGAAATATCTCAATAGCGTCAAT                         TATCTTCCTGTTGGGCACCCACCTTATTACAAAGGATTAGATTACATTTAT
genomic: AAGGTCAGATTGTGAGGGTGGACAAGGAGAAATATCTCAATAGCGTCAATgtaagaagga ... aatgtttcagTATCTTTCTGTTGGGCACCCACCTTATTACAAAGGATTAGATTACATTTAT
EST: gi|209711473|gb|BW665225.1|BW665225
EST:     AAGGTCAGATTGTGAGGGTGGACAAGGAGAAATATCTCAATAGCGTCAAT                         TATCTTTCTGTTGGGCACCCACCTTATTACAAAGGATTAGATTACATTTAT
genomic: AAGGTCAGATTGTGAGGGTGGACAAGGAGAAATATCTCAATAGCGTCAATgtaagaagga ... aatgtttcagTATCTTTCTGTTGGGCACCCACCTTATTACAAAGGATTAGATTACATTTAT
EST: gi|209706473|gb|BW670832.1|BW670832
EST:     AAGGTCAGATTGTGAGGGTGGACAAGGAGAAATATCTCAATAGCGTCAAT                         TATCTTTCTGTTGGGCACCCACCTTATTACAAAGGATTAGATTACATTTAT
genomic: AAGGTCAGATTGTGAGGGTGGACAAGGAGAAATATCTCAATAGCGTCAATgtaagaagga ... aatgtttcagTATCTTTCTGTTGGGCACCCACCTTATTACAAAGGATTAGATTACATTTAT
EST: gi|151404681|gb|EV274495.1|EV274495
EST:     AAGGTCAGATTGTGAGGGTGGACAAGGAGAAATATCTCAATAGCGTCAAT                         TATCTTTCTGTTGGGCACCCACCTTATTACAAAGGATTAGATTACATTTAT
genomic: AAGGTCAGATTGTGAGGGTGGACAAGGAGAAATATCTCAATAGCGTCAATgtaagaagga ... aatgtttcagTATCTTTCTGTTGGGCACCCACCTTATTACAAAGGATTAGATTACATTTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attggtttggtttcaattgtgaacactattgacttgtttgagtttaatgtttcagTATCTTTCTGTTGGGCACCCACCTTATTACAAAGGATTAGATTACATTTATGAGGACCGTGGTGAG
                                          tttaatgttt  TA-rich tract