1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgtcccttttgtttttggtgtgatccatccatgcaagtatcaatctatctagaatcgacggatattttactattttttaacattttatcttgctctatagGAGAAAGGATCTAGTGAAATTGTTCTCAAAGCAATGGGACGTGCAATAAATAAGACCGTAATGATTGCTGAACTGATCAAG
species | Glycine max |
transcript | GLYMA06G15380.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTCAAGGAAGGATGAGGAATTACATCACCTACGCCACCACTCTCCTCCAG GAGAAAGGATCTAGTGAAATTGTTCTCAAAGCAATGGGACGTGCAATAAATEST: gi|298172713|gb|HO019753.1|HO019753
genomic: CTCAAGGAAGGATGAGGAATTACATCACCTACGCCACCACTCTCCTCCAGgttacttact ... tgctctatagGAGAAAGGATCTAGTGAAATTGTTCTCAAAGCAATGGGACGTGCAATAAAT
EST: CTCAAGGAAGGATGAGGAATTACATCACCTACGCCACCACTCTCCTCCAG GAGAAAGGATCTAGTGAAATTGTTCTCAAAGCAATGGGACGTGCAATAAATEST: gi|298191598|gb|HO039077.1|HO039077
genomic: CTCAAGGAAGGATGAGGAATTACATCACCTACGCCACCACTCTCCTCCAGgttacttact ... tgctctatagGAGAAAGGATCTAGTGAAATTGTTCTCAAAGCAATGGGACGTGCAATAAAT
EST: CTCAAGGAAGGATGAGGAATTACATCACCTACGCCACCACTCTCCTCCAG GAGAAAGGATCTAGTGAAATTGTTCTCAAAGCAATGGGACGTGCAATAAATEST: gi|4297788|gb|AI442668.1|AI442668
genomic: CTCAAGGAAGGATGAGGAATTACATCACCTACGCCACCACTCTCCTCCAGgttacttact ... tgctctatagGAGAAAGGATCTAGTGAAATTGTTCTCAAAGCAATGGGACGTGCAATAAAT
EST: CTCAAGGAAGGATGAGGAATTACATCACCTACGCCACCACTCTCCTCCAG GAGAAAGGATCTAGTGANATTGTTCTCAAAGCAATGEST: gi|254343935|gb|GR857691.1|GR857691
genomic: CTCAAGGAAGGATGAGGAATTACATCACCTACGCCACCACTCTCCTCCAGgttacttact ... tgctctatagGAGAAAGGATCTAGTGAAATTGTTCTCAAAGCAATG
EST: CTCAAGGAAGGATGAGGAATTACATCACCTACGCCACCACTCTCCTCCAG GAGAAAGGATCTAGTGAAATTGTTCTCAAAGCAATGGGACGTGCAATAAATEST: gi|298175747|gb|HO018344.1|HO018344
genomic: CTCAAGGAAGGATGAGGAATTACATCACCTACGCCACCACTCTCCTCCAGgttacttact ... tgctctatagGAGAAAGGATCTAGTGAAATTGTTCTCAAAGCAATGGGACGTGCAATAAAT
EST: CTCAAGGAAGGATGAGGAATTACATCACCTACGCCACCACTCTCCTCCAG GAGAAAGGATCTAGTGAAATTGTTCTCAAAGCAATGGGACGTGCAATAAATEST: gi|298186819|gb|HO037452.1|HO037452
genomic: CTCAAGGAAGGATGAGGAATTACATCACCTACGCCACCACTCTCCTCCAGgttacttact ... tgctctatagGAGAAAGGATCTAGTGAAATTGTTCTCAAAGCAATGGGACGTGCAATAAAT
EST: CTCAAGGAAGGATGAGGAATTACATCACCTACGCCACCACTCTCCTCCAG GAGAAAGGTTCTAGTGAAATTGTTCTCAAAGCAATGGGACGTGCAATAAAT
genomic: CTCAAGGAAGGATGAGGAATTACATCACCTACGCCACCACTCTCCTCCAGgttacttact ... tgctctatagGAGAAAGGATCTAGTGAAATTGTTCTCAAAGCAATGGGACGTGCAATAAAT
tatctagaatcgacggatattttactattttttaacattttatcttgctctatagGAGAAAGGATCTAGTGAAATTGTTCTCAAAGCAATGGGACGTGCAATAAATAAGACCGTAATGATTGCTGAACTGATCAAG
ttttaac putative branch site (score: 2)
ttttatcttgctct CT-rich tract
atattttactattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtcccttttgtttttggtgtgatccatccatgcaagtatcaatctatctagaatcgacggatattttactattttttaacattttatcttgctctatagGAGAAAGGATCTAGTGAAATTGTTCTCAAAGCAATGGGACGTGCAATAAATAAGACCGTAATGATTGCTGAACTGATCAAG
tgtccct
- - - - - - - -tggtgtg
- - - - - - - - - - - -tccatcc
- - - - - - - - - - - - - - - -tgcaagt