Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atatgtaacttgtaaggctacagatggttgcttctgaagtctgaacttctggaccattcctgaattctgacattctatatcatataatgctattatgcagCTACAACTTTAACTGGTCTCCATTTTGCCACGACAACCTTGTTGACACTCATTCTTAAATCGTTGGGATATATCCAGACCTCTCATCTTCCATTATCTGA

Basic information

species Glycine max
transcript GLYMA06G15280.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G15280.2 (Glycine max), 3'ss of exon 2
lower sequence: Vv07s0031g01860.t01 (Vitis vinifera), 3'ss of exon 2
atatgtaacttgtaaggctacagatggttgcttctgaagtctgaacttctggaccattcctgaattctgacattctatatcat-ataatgctattatgcagCTACAACTTTAACTGGTCTCCATTTTGCCACGACAACCTTGTTGACACTCATTCTTAAATCGTTGGGATATATCCAGACCTCTCATCTTCCATTATCTGA
|| || || || |  |   ||| ||   |    || | |  |    |    |     |  |  || || | ||| | |   || ||  || |||  | |||| || || ||||||||||| ||||||||||| ||||||||| ||||     ||||||  | | ||||||| ||||||  ||| ||||| ||| |||||||
at-tggaaattttgtgttcacacatttatctgccttaggagtagcttctctgtgagcttatatatactaagattgtgtccaattatcttgttatcctacagCGACTACGTTAACTGGTCTGCATTTTGCCACAACAACCTTGATGACTACTGTTCTTAGGTGGCTGGGATACATCCAGGGCTCCCATCTACCAGTATCTGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209711272|gb|BW665324.1|BW665324
EST:     AATTATTCTTGTCAATAAGGCCTTGATGGCTACATATGGTTTTAGTTTTG                         CTACAACTTTAACTGGTCTCCATTTTGCCACGACAACCTTGTTGACACTCA
genomic: AATTATTCTTGTCAATAAGGCCTTGATGGCTACATATGGTTTTAGTTTTGgtatgacctc ... tattatgcagCTACAACTTTAACTGGTCTCCATTTTGCCACGACAACCTTGTTGACACTCA
EST: gi|19453364|gb|BM954774.1|BM954774
EST:     AATTATTCTTGTCAATAAGGCCTTGATGGCTACATATGGTTTTAGTTTTG                         CTACAACTTTAACTGGTCTCCATTTTGCCACGACAACCTTGTTGACACTCA
genomic: AATTATTCTTGTCAATAAGGCCTTGATGGCTACATATGGTTTTAGTTTTGgtatgacctc ... tattatgcagCTACAACTTTAACTGGTCTCCATTTTGCCACGACAACCTTGTTGACACTCA
EST: gi|209708218|gb|BW678588.1|BW678588
EST:     AATTATTCTTGTCAATAAGGCCTTGATGGCTACATATGGTTTTAGTTTTG                         CTACAACTTTAACTGGTCTCCATTTTGCCACGACAACCTTGTTGACACTCA
genomic: AATTATTCTTGTCAATAAGGCCTTGATGGCTACATATGGTTTTAGTTTTGgtatgacctc ... tattatgcagCTACAACTTTAACTGGTCTCCATTTTGCCACGACAACCTTGTTGACACTCA
EST: gi|209723755|gb|BW665678.1|BW665678
EST:     AATTATTCTTGTCAATAAGGCCTTGATGGCTACATATGGTTTTAGTTTTG                         CTACAACTTTAACTGGTCTCCATTTTGCCACGACAACCTTGTTGACACTCA
genomic: AATTATTCTTGTCAATAAGGCCTTGATGGCTACATATGGTTTTAGTTTTGgtatgacctc ... tattatgcagCTACAACTTTAACTGGTCTCCATTTTGCCACGACAACCTTGTTGACACTCA
EST: gi|11274442|gb|BF324795.1|BF324795
EST:     AATTATTCTTGTCAATAAGGCCTTGATGGCTACATATGGTTTTAGTTTTG                         CTACAACTTTAACTGGTCTCCATTTTGCCACGACAACCTTGTTGACACTCA
genomic: AATTATTCTTGTCAATAAGGCCTTGATGGCTACATATGGTTTTAGTTTTGgtatgacctc ... tattatgcagCTACAACTTTAACTGGTCTCCATTTTGCCACGACAACCTTGTTGACACTCA
EST: gi|192303798|gb|FG998696.1|FG998696
EST:     AATTATTCTTGTCAATAAGGCCTTGATGGCTACATATGGTTTTAGTTTTG                         CTACAACTTTAACTGGTCTCCATTTTGCCACGACAACCTTGTTGACACTCA
genomic: AATTATTCTTGTCAATAAGGCCTTGATGGCTACATATGGTTTTAGTTTTGgtatgacctc ... tattatgcagCTACAACTTTAACTGGTCTCCATTTTGCCACGACAACCTTGTTGACACTCA
EST: gi|151396657|gb|EV266530.1|EV266530
EST:     AATTATTCTTGTCAATAAGGCCTTGATGGCTACATATGGTTTTAGTTTTG                         CTACAACTTTAACTGGTCTCCATTTTGCCACGACAACCTTGTTGACACTCA
genomic: AATTATTCTTGTCAATAAGGCCTTGATGGCTACATATGGTTTTAGTTTTGgtatgacctc ... tattatgcagCTACAACTTTAACTGGTCTCCATTTTGCCACGACAACCTTGTTGACACTCA
EST: gi|213594381|gb|DB970003.1|DB970003
EST:     AATTATTCTTGTCAATAAGGCCTTGATGGCTACATATGGTTTTAGTTTTG                         CTACAACTTTAACTGGTCTCCATTTTGCCACGACAACCTTGTTGACACTCA
genomic: AATTATTCTTGTCAATAAGGCCTTGATGGCTACATATGGTTTTAGTTTTGgtatgacctc ... tattatgcagCTACAACTTTAACTGGTCTCCATTTTGCCACGACAACCTTGTTGACACTCA
EST: gi|151413064|gb|EV282872.1|EV282872
EST:     AATTATTCTTGTCAATAAGGCCTTGATGGCTACATATGGTTTTAGTTTTG                         CTACAACTTTAACTGGTCTCCATTTTGCCACGACAACCTTGTTGACACTCA
genomic: AATTATTCTTGTCAATAAGGCCTTGATGGCTACATATGGTTTTAGTTTTGgtatgacctc ... tattatgcagCTACAACTTTAACTGGTCTCCATTTTGCCACGACAACCTTGTTGACACTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttctggaccattcctgaattctgacattctatatcatataatgctattatgcagCTACAACTTTAACTGGTCTCCATTTTGCCACGACAACCTTGTTGACACTCATTCTTAAATCGTTGGGATATATCCAGACCTCTCATCTTCCATTATCTGA
                   ttctgac  putative branch site (score: 2)
                              tatatcatataatgct  TA-rich tract