1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ccccttctttgagcttttcaagttcctcttctgttttcctgtattctgttgctgtttttgttgaggggttgattcattattggtaaatgtctggtgccagGCTAAACTAGCAAAGCTGCGGAGGGAACTCCTTACACCTTCATCAAAAGGAGCTGGAGGTGCTGGTGAAGGTTTTGATGTTACTAAAAGTGGGGATTCAA
species | Glycine max |
transcript | GLYMA06G15180.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAAGGACCCNNNNNNNCAAGGCTACTGCTCATCATTTGGGCTTGCTGAAG GCTAAACTAGCAAAGCTGCGGAGGGAACTCCTTACACCTTCATCAAAAGGAEST: gi|192294592|gb|FG986441.1|FG986441
genomic: CAAGGACCCAAAAAAACAAGGCTACTGCTCATCATTTGGGCTTGCTGAAGgtaagcacat ... ctggtgccagGCTAAACTAGCAAAGCTGCGGAGGGAACTCCTTACACCTTCATCAAAAGGA
EST: AAGGACCCNNNNNNNNCAAGGCTACTGCTCATCATTTGGGCTTGCTGAAG GCTAAACTAGCAAAGCTGCGGAGGGAACTCCTTACACCTTCATCAAAAGGAEST: gi|254325516|gb|GR838397.1|GR838397
genomic: AAGGACCC-AAAAAAACAAGGCTACTGCTCATCATTTGGGCTTGCTGAAGgtaagcacat ... ctggtgccagGCTAAACTAGCAAAGCTGCGGAGGGAACTCCTTACACCTTCATCAAAAGGA
EST: CAAGGACCCNNNNNNNCAAGGCTACTGCTCATCATTTGGGCTTGCTGAAG GCTAAACTAGCAAAGCTGCGGAGGGAACTCCTTACACCTTCATCAAAAGGA
genomic: CAAGGACCCAAAAAAACAAGGCTACTGCTCATCATTTGGGCTTGCTGAAGgtaagcacat ... ctggtgccagGCTAAACTAGCAAAGCTGCGGAGGGAACTCCTTACACCTTCATCAAAAGGA
ctgttgctgtttttgttgaggggttgattcattattggtaaatgtctggtgccagGCTAAACTAGCAAAGCTGCGGAGGGAACTCCTTACACCTTCATCAAAAGGAGCTGGAGGTGCTGGTGAAGGTTTTGATGTTACTAAAAGTGGGGATTCAA
ggttgat putative branch site (score: 5)
attcattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccccttctttgagcttttcaagttcctcttctgttttcctgtattctgttgctgtttttgttgaggggttgattcattattggtaaatgtctggtgccagGCTAAACTAGCAAAGCTGCGGAGGGAACTCCTTACACCTTCATCAAAAGGAGCTGGAGGTGCTGGTGAAGGTTTTGATGTTACTAAAAGTGGGGATTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG