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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactatacccagaattttgcaagtcctttaaagtttcatttcccatatgaagtatccacatatagaatcccatcatcctcataaacagatgaatataaaattggagatctcaatttaagttttattttgcagGGAGATCGGAAAGTCTCTGTTCTTCTTGGTATCTCTTTTGCCTTTGTGCTGCATGTGATAAGCATTTACTGGTGGTATCAAAATGATGATCTTTTATACC

Basic information

species Glycine max
transcript GLYMA06G14590.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9819498|gb|BE555011.1|BE555011
EST:     CTGTGATGTTCAAGTCAAATGAAATTGTTAAGAAGCAGACTGCCCTGAAG                         GGAGATCGGAAAGTCTCTGTTCTTCTTGGTATCTCTTTTGCCTTTGTGCTG
genomic: CTGTGATGTTCAAGTCAAATGAAATTGTTAAGAAGCAGACTGCCCTGAAGgtactatacc ... tattttgcagGGAGATCGGAAAGTCTCTGTTCTTCTTGGTATCTCTTTTGCCTTTGTGCTG
EST: gi|208123385|gb|GD921361.1|GD921361
EST:     CTGTGATGTTCAAGTCAAATGAAATTGTTAAGAAGCAGACTGCCCTGAAG                         GGAGATCGGAAAGTCTCTGTTCTTCTTGGTATCTCTTTTGCCTTTGTGCTT
genomic: CTGTGATGTTCAAGTCAAATGAAATTGTTAAGAAGCAGACTGCCCTGAAGgtactatacc ... tattttgcagGGAGATCGGAAAGTCTCTGTTCTTCTTGGTATCTCTTTTGCCTTTGTGCT-
EST: gi|208068080|gb|GD861870.1|GD861870
EST:     CTGTGATGTTCAAGTCAAATGAAATTGTTAAGAAGCAGACTGCCCTGAAG                         GGAGATCGGAAAGTCTCTGTTCTTCTTGGTATCTCTTTTGCCTTTGTGCTG
genomic: CTGTGATGTTCAAGTCAAATGAAATTGTTAAGAAGCAGACTGCCCTGAAGgtactatacc ... tattttgcagGGAGATCGGAAAGTCTCTGTTCTTCTTGGTATCTCTTTTGCCTTTGTGCTG
EST: gi|207807586|gb|GD776605.1|GD776605
EST:     CTGTGATGTTCAAGTCAAATGAAATTGTTAAGAAGCAGACTGCCCTGAAG                         GGAGATCGGAAAGTCTCTGTTCTTCTTGGTAT
genomic: CTGTGATGTTCAAGTCAAATGAAATTGTTAAGAAGCAGACTGCCCTGAAGgtactatacc ... tattttgcagGGAGATCGGAAAGTCTCTGTTCTTCTTGGTAT
EST: gi|208049865|gb|GD844024.1|GD844024
EST:     CTGTGATGTTCAAGTCAAATGAAATTGTTAAGAAGCAGACTGCCCTGAAG                         GGAGATCGGAAAGTCTCTGTTCTTCTTGGTATCTCTTTTGCCTTTGTGCTG
genomic: CTGTGATGTTCAAGTCAAATGAAATTGTTAAGAAGCAGACTGCCCTGAAGgtactatacc ... tattttgcagGGAGATCGGAAAGTCTCTGTTCTTCTTGGTATCTCTTTTGCCTTTGTGCTG
EST: gi|208144909|gb|GD943472.1|GD943472
EST:     CTGTGATGTTCAAGTCAAATGAAATTGTTAAGAAGCAGACTGCCCTGAAG                         GGAGATCGGAAAGTCTCTGTTCTTCTTGGTATCTCTTTTGCCTTTGTGCTG
genomic: CTGTGATGTTCAAGTCAAATGAAATTGTTAAGAAGCAGACTGCCCTGAAGgtactatacc ... tattttgcagGGAGATCGGAAAGTCTCTGTTCTTCTTGGTATCTCTTTTGCCTTTGTGCTG
EST: gi|193671945|gb|FK616271.1|FK616271
EST:     CTGTGATGTTCAAGTCAAATGAAATTGTTAAGAAGCAGACTGCCCTGAAG                         GGAGATCGGAAAGTCTCTGTTCTTCTCGGTATCTACTTTTGCCTTT
genomic: CTGTGATGTTCAAGTCAAATGAAATTGTTAAGAAGCAGACTGCCCTGAAGgtactatacc ... tattttgcagGGAGATCGGAAAGTCTCTGTTCTTCTTGGTATCT-CTTTTGCCTTT
EST: gi|193557168|gb|FK512811.1|FK512811
EST:     CTGTGATGTTCAAGTCAAATGAAATTGTTAAGAAGCAGACTGCCCTGAAG                         GGAGATCGGAAAGTCTCTGTTCTTCTTGGTATCTCTTTTGC
genomic: CTGTGATGTTCAAGTCAAATGAAATTGTTAAGAAGCAGACTGCCCTGAAGgtactatacc ... tattttgcagGGAGATCGGAAAGTCTCTGTTCTTCTTGGTATCTCTTTTGC
EST: gi|9819411|gb|BE554924.1|BE554924
EST:     CTGTGATGTTCAAGTCAAATGAAATTGTTAAGAAGCAGACTGCCCTGAAG                         GGAGATCGGAAAGTCTCTGTTCTTCTTGGTATCTCTTTTGCCTTTGTGCTG
genomic: CTGTGATGTTCAAGTCAAATGAAATTGTTAAGAAGCAGACTGCCCTGAAGgtactatacc ... tattttgcagGGAGATCGGAAAGTCTCTGTTCTTCTTGGTATCTCTTTTGCCTTTGTGCTG
EST: gi|193323640|gb|FK290492.1|FK290492
EST:     GACTGCCCTGAAG                         GGAGATCGGAAAGTCTCTGTTCTTCTTGGTATCTCTTTTGCCTTTGTGCTG
genomic: GACTGCCCTGAAGgtactatacc ... tattttgcagGGAGATCGGAAAGTCTCTGTTCTTCTTGGTATCTCTTTTGCCTTTGTGCTG
EST: gi|51342137|gb|CO983398.1|CO983398
EST:     GTCAAATGAAATTGTTAAGAAGCAGACTGCNNNGAAG                         GGAGATCGGAAAGTCTCTGNNCTTCTTGGTATCTCTTTTGCCTTNGTGCTG
genomic: GTCAAATGAAATTGTTAAGAAGCAGACTGCCCTGAAGgtactatacc ... tattttgcagGGAGATCGGAAAGTCTCTGTTCTTCTTGGTATCTCTTTTGCCTTTGTGCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcataaacagatgaatataaaattggagatctcaatttaagttttattttgcagGGAGATCGGAAAGTCTCTGTTCTTCTTGGTATCTCTTTTGCCTTTGTGCTGCATGTGATAAGCATTTACTGGTGGTATCAAAATGATGATCTTTTATACC
                                          ttttatttt  CT-rich tract
                             atctcaatttaagttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtactatacccagaattttgcaagtcctttaaagtttcatttcccatatgaagtatccacatatagaatcccatcatcctcataaacagatgaatataaaattggagatctcaatttaagttttattttgcagGGAGATCGGAAAGTCTCTGTTCTTCTTGGTATCTCTTTTGCCTTTGTGCTGCATGTGATAAGCATTTACTGGTGGTATCAAAATGATGATCTTTTATACC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG