1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttgccctctgtttctgctgccatatctatgctctatttatttggcttgttatctgttgatcttcttgttcataaattcgttttgttggactgagatgcagGTGGTGCTGAGGGTTCAAAGCAGAGCAGAAGTGAGAAGAAGAGTCGAAAAGCAATGTTGAAGCTGGGACTAAAACCTGTCACCGGTGTTAGTAGGGTCAC
species | Glycine max |
transcript | GLYMA06G14250.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GACAAGGAAGACGATGCTCTAG GTGGTGCTGAGGGTTCAAAGCAGAGCAGAAGTGAGAAGAAGAGTCGAAAAGEST: gi|207690124|gb|GD671509.1|GD671509
genomic: GACAAGGAAGACGATGCTCTAGgtcctcttct ... tgagatgcagGTGGTGCTGAGGGTTCAAAGCAGAGCAGAAGTGAGAAGAAGAGTCGAAAAG
EST: GACAAGGAAGACGATGCTCTAG GTGGTGCTGAGGGTTCAAAGCAGAGCAGAAGTGAGAAGAAGAGTCGAAAAGEST: gi|193621812|gb|FK569160.1|FK569160
genomic: GACAAGGAAGACGATGCTCTAGgtcctcttct ... tgagatgcagGTGGTGCTGAGGGTTCAAAGCAGAGCAGAAGTGAGAAGAAGAGTCGAAAAG
EST: TGAGGACGACGACGACGATGATGAAGATGACAAGGAAGACGATGCTCTAG GTGGTGCTGAGGGTTCAAAGCAGAGCAGAAGTGAGAAGAAGAGTCGAAAAG
genomic: TGAGGACGACGACGACGATGATGAAGATGACAAGGAAGACGATGCTCTAGgtcctcttct ... tgagatgcagGTGGTGCTGAGGGTTCAAAGCAGAGCAGAAGTGAGAAGAAGAGTCGAAAAG
ttgttatctgttgatcttcttgttcataaattcgttttgttggactgagatgcagGTGGTGCTGAGGGTTCAAAGCAGAGCAGAAGTGAGAAGAAGAGTCGAAAAGCAATGTTGAAGCTGGGACTAAAACCTGTCACCGGTGTTAGTAGGGTCAC
tgttgat putative branch site (score: 4)
ttcataaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgccctctgtttctgctgccatatctatgctctatttatttggcttgttatctgttgatcttcttgttcataaattcgttttgttggactgagatgcagGTGGTGCTGAGGGTTCAAAGCAGAGCAGAAGTGAGAAGAAGAGTCGAAAAGCAATGTTGAAGCTGGGACTAAAACCTGTCACCGGTGTTAGTAGGGTCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
-tgccctc
- - - - - - -ctgctgc
- - - - - - - - - - - - - tatgctc
- - - - - - - - - - - - - - - - - - - - - -gcttgtt
- - - - - - - - - - - - - - - - - - - - - - - - - -tctgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgttgg