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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttttcgtctcaaataaggttttctcgttctgggtcttttcatttcgttaaggttgtttttactggttgatacagATTCACAGGAAAAACCCTTAAAGCGGAGAATAAAAGGCAACGACTTTTCATCTCTACGCAAGTGATTATGGCGGTTGTTGAGAATGTTGGGGCCAAAATC

Basic information

species Glycine max
transcript GLYMA06G14050.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298192303|gb|HO036385.1|HO036385
EST:     GTTCAGTTTGATCTTATGTCAATGAAGGATTTTTAGACAAAACCCAG                         ATTCACAGGAAAAACCCTTAAAGCGGAGAATAAAAGGCAACGACTTTTCAT
genomic: GTTCAGTTTGATCTTATGTCAATGAAGGATTTTTAGACAAAACCCAGgtttgttttc ... gttgatacagATTCACAGGAAAAACCCTTAAAGCGGAGAATAAAAGGCAACGACTTTTCAT
EST: gi|22541215|gb|BU091058.1|BU091058
EST:     GTTCAGTTTGATCTTATGTCAATGAAGGATTTTTAGACAAAACCCAG                         ATTCACAGGAAAAACCCTTAAAGCGGAGAATAAAAGGCAACGACTNTTCAT
genomic: GTTCAGTTTGATCTTATGTCAATGAAGGATTTTTAGACAAAACCCAGgtttgttttc ... gttgatacagATTCACAGGAAAAACCCTTAAAGCGGAGAATAAAAGGCAACGACTTTTCAT
EST: gi|208309123|gb|GE108851.1|GE108851
EST:     GTTCAGTTTGATCTTATGTCAATGAAGGATTTTTAGACAAAACCCAG                         ATTCACAGGAAAAACCCTTAAAGCGGAGAATAAAAGGCAACGACTTTTCAT
genomic: GTTCAGTTTGATCTTATGTCAATGAAGGATTTTTAGACAAAACCCAGgtttgttttc ... gttgatacagATTCACAGGAAAAACCCTTAAAGCGGAGAATAAAAGGCAACGACTTTTCAT
EST: gi|24135747|gb|BU926257.1|BU926257
EST:     GTTCAGTTTGATCTTATGTCAATGAAGGATTTTTAGACAAAACCCAG                         ATTCACAGGAAAAACCCTTAAAGCGGAGAATAAAAGGCAACGACTTTTCAT
genomic: GTTCAGTTTGATCTTATGTCAATGAAGGATTTTTAGACAAAACCCAGgtttgttttc ... gttgatacagATTCACAGGAAAAACCCTTAAAGCGGAGAATAAAAGGCAACGACTTTTCAT
EST: gi|207707299|gb|GD687707.1|GD687707
EST:     GTTCAGTTTGATCTTATGTCAATGAAGGATTTTTAGACAAAACCCAG                         ATTCACAGGAAAAACCCTTAAAGCGGAGAATAAAAGGCAACGACTTTTCAT
genomic: GTTCAGTTTGATCTTATGTCAATGAAGGATTTTTAGACAAAACCCAGgtttgttttc ... gttgatacagATTCACAGGAAAAACCCTTAAAGCGGAGAATAAAAGGCAACGACTTTTCAT
EST: gi|22539945|gb|BU089788.1|BU089788
EST:     GTTCAGTTTGATCTTATGTCAATGAAGGATTTTTAGACAAAACCCAG                         ATTCACAGGAAAAACCCTTAAAGCGGAGAATAAAAGGCAACGACTTTTCAT
genomic: GTTCAGTTTGATCTTATGTCAATGAAGGATTTTTAGACAAAACCCAGgtttgttttc ... gttgatacagATTCACAGGAAAAACCCTTAAAGCGGAGAATAAAAGGCAACGACTTTTCAT
EST: gi|254324020|gb|GR840445.1|GR840445
EST:     GTTCAGTTTGATCTTATGTCAATGAAGGATTTTTAGACAAAACCCAG                         ATTCACAGGAAAAACCCTTAAAGCGGAGAATAAAAGGCAACGACTTTTCAT
genomic: GTTCAGTTTGATCTTATGTCAATGAAGGATTTTTAGACAAAACCCAGgtttgttttc ... gttgatacagATTCACAGGAAAAACCCTTAAAGCGGAGAATAAAAGGCAACGACTTTTCAT
EST: gi|151399022|gb|EV268893.1|EV268893
EST:     GTTCAGTTTGATCTTATGTCAATGAAGGATTTTTAGACAAAACCCAG                         ATTCACAGGAAAAACCCTTAAAGCGGAGAATAAAAGGCAACGACTTTTCAT
genomic: GTTCAGTTTGATCTTATGTCAATGAAGGATTTTTAGACAAAACCCAGgtttgttttc ... gttgatacagATTCACAGGAAAAACCCTTAAAGCGGAGAATAAAAGGCAACGACTTTTCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttctcgttctgggtcttttcatttcgttaaggttgtttttactggttgatacagATTCACAGGAAAAACCCTTAAAGCGGAGAATAAAAGGCAACGACTTTTCATCTCTACGCAAGTGATTATGGCGGTTGTTGAGAATGTTGGGGCCAAAATC
                                            ggttgat  putative branch site (score: 5)
                ttttcattt  TA-rich tract