1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgagatgtcttttttggtttcttgtttcataactgtcatagaatttttcagtgtctcatgatgcttcttaccctgaaatcagAGGCCGGAAGAGGGCTTGTGTGACTTACTGCATAACCTACATTTTGAGTTGCATCACCAAGCATTCTCCTCATTACAAAGTCCTGATGTTGGGCCGTATT
species | Glycine max |
transcript | GLYMA06G13760.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGGTCTTCCATGCTCTTTGGAACAATTGTCGGATCTCTAGCTGACAAACA ACGCCGGAAGAGGGCTTGTGTGACTTACTGCATAACCTACATTTTGAGTTGEST: gi|15813823|gb|BI786098.1|BI786098
genomic: GGGTCTTCCATGCTCTTTGGAACAATTGTCGGATCTCTAGCTGACAAACAgtgagatgtc ... ctgaaatcagAGGCCGGAAGAGGGCTTGTGTGACTTACTGCATAACCTACATTTTGAGTTG
EST: GGGTCTTCCATGCTCTTTGGAACAATTGTCGGATCTCTAGCTGACAAACA AGGCCGGAAGAGGGCTTGTGTGACTTACTGCATAACCTACATTTTGAGTTGEST: gi|298175985|gb|HO015390.1|HO015390
genomic: GGGTCTTCCATGCTCTTTGGAACAATTGTCGGATCTCTAGCTGACAAACAgtgagatgtc ... ctgaaatcagAGGCCGGAAGAGGGCTTGTGTGACTTACTGCATAACCTACATTTTGAGTTG
EST: GGGTCTTCCATGCTCTTTGGAACAATTGTCGGATCTCTAGCTGACAAACA AGGCCGGAAGAGGGCTTGTGTGACTTACTGCATAACCTACATTTTGAGTTGEST: gi|254342363|gb|GR858525.1|GR858525
genomic: GGGTCTTCCATGCTCTTTGGAACAATTGTCGGATCTCTAGCTGACAAACAgtgagatgtc ... ctgaaatcagAGGCCGGAAGAGGGCTTGTGTGACTTACTGCATAACCTACATTTTGAGTTG
EST: GGGTCTTCCATGCTCTTTGGAACAATTGTCGGATCTCTAGCTGACAAACA AGGCCGGAAGAGGGCTTGTGTGACTTACTGCATAACCTACATTTTGAGTTGEST: gi|208220660|gb|GE018482.1|GE018482
genomic: GGGTCTTCCATGCTCTTTGGAACAATTGTCGGATCTCTAGCTGACAAACAgtgagatgtc ... ctgaaatcagAGGCCGGAAGAGGGCTTGTGTGACTTACTGCATAACCTACATTTTGAGTTG
EST: GGGTCTTCCATGCTCTTTGGAACAATTGTCGGATCTCTAGCTGACAAACA AGGCCGGAAGAGGGCTTGTGTGACTTACTGCATAACCTACATTTTGAGTTGEST: gi|209715234|gb|BW668562.1|BW668562
genomic: GGGTCTTCCATGCTCTTTGGAACAATTGTCGGATCTCTAGCTGACAAACAgtgagatgtc ... ctgaaatcagAGGCCGGAAGAGGGCTTGTGTGACTTACTGCATAACCTACATTTTGAGTTG
EST: GGGTCTTCCATGCTCTTTGGAACAATTGTCGGATCTCTAGCTGACAAACA AGGCCGGAAGAGGGCTTGTGTGACTTACTGCATAACCTACATTTTGAGTTGEST: gi|192322278|gb|FK014519.1|FK014519
genomic: GGGTCTTCCATGCTCTTTGGAACAATTGTCGGATCTCTAGCTGACAAACAgtgagatgtc ... ctgaaatcagAGGCCGGAAGAGGGCTTGTGTGACTTACTGCATAACCTACATTTTGAGTTG
EST: GGGTCTTCCATGCTCTTTGGAACAATTGTCGGATCTCTAGCTGACAAACA AGGCCGGAAGAGGGCTTGTGTGACTTACTGCATAACCTACATTTTGAGTTGEST: gi|213601393|gb|DB968709.1|DB968709
genomic: GGGTCTTCCATGCTCTTTGGAACAATTGTCGGATCTCTAGCTGACAAACAgtgagatgtc ... ctgaaatcagAGGCCGGAAGAGGGCTTGTGTGACTTACTGCATAACCTACATTTTGAGTTG
EST: GGGTCTTCCATGCTCTTTGGAACAATTGTCGGATCTCTAGCTGACAAACA AGGCCGGAAGAGGGCTTGTGTGACTTACTGCATAACCTACATTTTGAGTTGEST: gi|18041240|gb|BM309534.1|BM309534
genomic: GGGTCTTCCATGCTCTTTGGAACAATTGTCGGATCTCTAGCTGACAAACAgtgagatgtc ... ctgaaatcagAGGCCGGAAGAGGGCTTGTGTGACTTACTGCATAACCTACATTTTGAGTTG
EST: GGGTCTTCCATGCTCTTTGGAACAATTGTCGGATCTCTAGCTGACAAACA AGGCCGGAAGAGGGCTTGTGTGACTTACTGCATAACCTACATTTTGAGTTGEST: gi|209709210|gb|BW657179.1|BW657179
genomic: GGGTCTTCCATGCTCTTTGGAACAATTGTCGGATCTCTAGCTGACAAACAgtgagatgtc ... ctgaaatcagAGGCCGGAAGAGGGCTTGTGTGACTTACTGCATAACCTACATTTTGAGTTG
EST: GGGTCTTCCATGCTCTTTGGAACAATTGTCGGATCTCTAGCTGACAAACA AGGCCGGAAGAGGGCTTGTGTGACTTACTGCATAACCTACATTTTGAGTTGEST: gi|207828966|gb|GD797689.1|GD797689
genomic: GGGTCTTCCATGCTCTTTGGAACAATTGTCGGATCTCTAGCTGACAAACAgtgagatgtc ... ctgaaatcagAGGCCGGAAGAGGGCTTGTGTGACTTACTGCATAACCTACATTTTGAGTTG
EST: AATTGTCGGATCTCTAGCTGACAAACA AGGCCGGAAGAGGGCTTGTGTGACTTACTGCATAACCTACATTTTGAGTTGEST: gi|16106397|gb|BI894137.1|BI894137
genomic: AATTGTCGGATCTCTAGCTGACAAACAgtgagatgtc ... ctgaaatcagAGGCCGGAAGAGGGCTTGTGTGACTTACTGCATAACCTACATTTTGAGTTG
EST: GGGTCTTCCATGCTCTTTGGAACAATTGTCGGATCTCTAGCTGACAAACA AGGCCGGAAGAGGGCTTGTGTGACTTACTGCATAACCTACATTTTGAGTTGEST: gi|208265793|gb|GE060922.1|GE060922
genomic: GGGTCTTCCATGCTCTTTGGAACAATTGTCGGATCTCTAGCTGACAAACAgtgagatgtc ... ctgaaatcagAGGCCGGAAGAGGGCTTGTGTGACTTACTGCATAACCTACATTTTGAGTTG
EST: GGGTCTTCCATGCTCTTTGGAACAATTGTCGGATCTCTAGCTGACAAACA AGGCCGGAAGAGGGCTTGTGTGACTTACTGCATAACCTACATTTTGAGTTGEST: gi|193466929|gb|FK430334.1|FK430334
genomic: GGGTCTTCCATGCTCTTTGGAACAATTGTCGGATCTCTAGCTGACAAACAgtgagatgtc ... ctgaaatcagAGGCCGGAAGAGGGCTTGTGTGACTTACTGCATAACCTACATTTTGAGTTG
EST: GGGTCTTCCATGCTCTTTGGAACAATTGTCGGATCTCTAGCTGACAAACA AGGCCGGAAGAGGGCTTGTGTGACTTACTGCATAACCTACATTTTGAGTTGEST: gi|19453079|gb|BM954489.1|BM954489
genomic: GGGTCTTCCATGCTCTTTGGAACAATTGTCGGATCTCTAGCTGACAAACAgtgagatgtc ... ctgaaatcagAGGCCGGAAGAGGGCTTGTGTGACTTACTGCATAACCTACATTTTGAGTTG
EST: GGGTCTTCCATGCTCTTTGGAACAATTGTCGGATCTCTAGCTGACAAACA AGGCCGGAAGAGGGCTTGTGTGACTTACTGCATAACCTACATTTTGAGTTGEST: gi|208164179|gb|GD959395.1|GD959395
genomic: GGGTCTTCCATGCTCTTTGGAACAATTGTCGGATCTCTAGCTGACAAACAgtgagatgtc ... ctgaaatcagAGGCCGGAAGAGGGCTTGTGTGACTTACTGCATAACCTACATTTTGAGTTG
EST: GGGTCTTCCATGCTCTTTGGAACAATTGTCGGATCTCTAGCTGACAAACA AGGCCGGAAGAGGGCTTGTGTGACTTACTGCATAACCTACATTTTGAGTTGEST: gi|213587653|gb|DB971376.1|DB971376
genomic: GGGTCTTCCATGCTCTTTGGAACAATTGTCGGATCTCTAGCTGACAAACAgtgagatgtc ... ctgaaatcagAGGCCGGAAGAGGGCTTGTGTGACTTACTGCATAACCTACATTTTGAGTTG
EST: GGGTCTTCCATGCTCTTTGGAACAATTGTCGGATCTCTAGCTGACAAACA AGGCCGGAAGAGGGCTTGTGTGACTTACTGCATAACCTACATTTTGAGTTGEST: gi|298198016|gb|HO039555.1|HO039555
genomic: GGGTCTTCCATGCTCTTTGGAACAATTGTCGGATCTCTAGCTGACAAACAgtgagatgtc ... ctgaaatcagAGGCCGGAAGAGGGCTTGTGTGACTTACTGCATAACCTACATTTTGAGTTG
EST: GGGTCTTCCATGCTCTTTGGAACAATTGTCGGATCTCTAGCTGACAAACA AGGCCGGAAGAGGGCTTGTGTGACTTACTGCATAACCTACATTTTGAGTTGEST: gi|209701782|gb|BW667407.1|BW667407
genomic: GGGTCTTCCATGCTCTTTGGAACAATTGTCGGATCTCTAGCTGACAAACAgtgagatgtc ... ctgaaatcagAGGCCGGAAGAGGGCTTGTGTGACTTACTGCATAACCTACATTTTGAGTTG
EST: GGGTCTTCCATGCTCTTTGGAACAATTGTCGGATCTCTAGCTGACAAACA AGGCCGGAAGAGGGCTTGTGTGACTTACTGCATAACCTACATTTTGAGTTGEST: gi|209715146|gb|BW665621.1|BW665621
genomic: GGGTCTTCCATGCTCTTTGGAACAATTGTCGGATCTCTAGCTGACAAACAgtgagatgtc ... ctgaaatcagAGGCCGGAAGAGGGCTTGTGTGACTTACTGCATAACCTACATTTTGAGTTG
EST: GGGTCTTCCATGCTCTTTGGAACAATTGTCGGATCTCTAGCTGACAAACA AGGCCGGAAGAGGGCTTGTGTGACTTACTGCATAACCTACATTTTGAGTTG
genomic: GGGTCTTCCATGCTCTTTGGAACAATTGTCGGATCTCTAGCTGACAAACAgtgagatgtc ... ctgaaatcagAGGCCGGAAGAGGGCTTGTGTGACTTACTGCATAACCTACATTTTGAGTTG
cataactgtcatagaatttttcagtgtctcatgatgcttcttaccctgaaatcagAGGCCGGAAGAGGGCTTGTGTGACTTACTGCATAACCTACATTTTGAGTTGCATCACCAAGCATTCTCCTCATTACAAAGTCCTGATGTTGGGCCGTATT
ttcttac putative branch site (score: 2)
cttcttaccct CT-rich tract
atagaattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagatgtcttttttggtttcttgtttcataactgtcatagaatttttcagtgtctcatgatgcttcttaccctgaaatcagAGGCCGGAAGAGGGCTTGTGTGACTTACTGCATAACCTACATTTTGAGTTGCATCACCAAGCATTCTCCTCATTACAAAGTCCTGATGTTGGGCCGTATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC