1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tgtatgtctatttcatagtgttgttgcccttgctttgcacatctggtttatcagatggttaatcatgaactgagttttattctttatatgatgctctcagATTTCGGGATTGGAGTTCAGACAGGGGCTCCGAGACCAACTCTCCTGCAATTCACGTGACACGCTCGGGAAGAGTTAAGAATACACTAAATTCAGTTTCC
species | Glycine max |
transcript | GLYMA06G13200.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTTTTGAACTAGGCTACAATCATGAATTTTCAGCAAGACAAATTTGTTAG ATTTCGGGATTGGAGTTCAGACAGGGGCTCCGAGACCAACTCTCCTGCAATEST: gi|209708135|gb|BW671151.1|BW671151
genomic: CTTTTGAACTAGGCTACAATCATGAATTTTCAGCAAGACAAATTTGTTAGgttagtttaa ... atgctctcagATTTCGGGATTGGAGTTCAGACAGGGGCTCCGAGACCAACTCTCCTGCAAT
EST: CTTTTGAACTAGGCTACAATCATGAATTTTCAGCAAGACAAATTTGTTAG ATTTCGGGATTGGAGTTCAGACAGGGGCTCCGAGACCAACTCTCCTGCAAT
genomic: CTTTTGAACTAGGCTACAATCATGAATTTTCAGCAAGACAAATTTGTTAGgttagtttaa ... atgctctcagATTTCGGGATTGGAGTTCAGACAGGGGCTCCGAGACCAACTCTCCTGCAAT
gtttatcagatggttaatcatgaactgagttttattctttatatgatgctctcagATTTCGGGATTGGAGTTCAGACAGGGGCTCCGAGACCAACTCTCCTGCAATTCACGTGACACGCTCGGGAAGAGTTAAGAATACACTAAATTCAGTTTCC
ggttaat putative branch site (score: 4)
tgctctc putative PPT
ttttattctttatatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtatgtctatttcatagtgttgttgcccttgctttgcacatctggtttatcagatggttaatcatgaactgagttttattctttatatgatgctctcagATTTCGGGATTGGAGTTCAGACAGGGGCTCCGAGACCAACTCTCCTGCAATTCACGTGACACGCTCGGGAAGAGTTAAGAATACACTAAATTCAGTTTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
tgtatgt
- - - - - - - - - - ttgttgc
- - - - - - - - - - - - - -ccttgct
- - - - - - - - - - - - - - - - - -tgcacat
- - - - - - - - - - - - - - - - - - - - - - - - - - -gatggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgaac