1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ggggcatactaattttcatttgtaggtactactaggttgtatagtatgctcttgattatttgattttggattatgagaacatttgagtttgaacttacagGTGAAGAGGATACTCCAATCGGGGCTATGCCTGGATGCTACAGGCTTGGGTGGAGGCATGGACTTGTAGAAGAG
species | Glycine max |
transcript | GLYMA06G12110.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATTTCGTGTGTCCGCTTTTCATTCACGAAG GTGAAGAGGATACTCCAATTGGGGCTATGCCTGGATGCTACAGGCTTGGGTEST: gi|193669590|gb|FK612316.1|FK612316
genomic: ATTTCGTGTATCCGCTTTTCATTCACGAAGgttggtctct ... gaacttacagGTGAAGAGGATACTCCAATCGGGGCTATGCCTGGATGCTACAGGCTTGGGT
EST: GCCGGCGAATTTCGTGTATCCGCTTTTCATTCACGAAG GTGAAGAGGATACTCCAATTGGGGCTATGCCTGGATGCTACAGGCTTGGGT
genomic: GCCGGCGAATTTCGTGTATCCGCTTTTCATTCACGAAGgttggtctct ... gaacttacagGTGAAGAGGATACTCCAATCGGGGCTATGCCTGGATGCTACAGGCTTGGGT
atgctcttgattatttgattttggattatgagaacatttgagtttgaacttacagGTGAAGAGGATACTCCAATCGGGGCTATGCCTGGATGCTACAGGCTTGGGTGGAGGCATGGACTTGTAGAAGAG
ttgattatttgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggggcatactaattttcatttgtaggtactactaggttgtatagtatgctcttgattatttgattttggattatgagaacatttgagtttgaacttacagGTGAAGAGGATACTCCAATCGGGGCTATGCCTGGATGCTACAGGCTTGGGTGGAGGCATGGACTTGTAGAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- -gcatact
- - - - - - - - - - - - - - - - - ggttgta